Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241754g00005 ATGGAGAATCAAAGAAAAGCAATAGAAGAAGAGCTACTTAGAGGGCGTGACATGGCGAACCAATTGCTTGAAGTGCTTGTTGCTCATCACAAAAACTCCAATAATAATAATAATGATGATGATAAAGGGTTAATGGTACTATTACCATATGGTGAAGATCTTGTGCATCAAGTACTAAGATCATTCACAAATTCCCTTTTGATCTTGAACACTAGTACTATTACTACCACTAAAATTATTAGTGGCGGTGTTGTTGATGATGATGTTTTCTCCGATGGAGGGGTGGTTGTTGATGATCCTATAAAGTTCAGAGATTTCTCTTCTACTACTACTTTTCCGAATCTTCACACAAAAGATAATCGATCAGGCCGCTACAAGAAGAGGAAATCATCTGTTCCAACTTGGGAGAAGGACACTCCAATTTTAATTGAAGATGGACATGCATGGAGAAAATATGGACAGAAGATAACAATGAATTCAAAATACCTAAGGCATTACTATAGATGTACTCATAAGAATGATCAAGGTTGTCCAGCAACCAAACAAGTTCAAAGAATTAAAGAGAATCCTCCATTGTTCCGAACAACCTATTTTGGTCATCACACTTGCAAGAGCACTTATTATGAGGAATCAATTTTGGAACCTCAATCTTTTTCTGGATCTTCTATGCTCCTTAGCTTCAATAATAATAATAATAATAATAATAACAACAACAACATTATTATTACTCCTAGCAAAGAACATGCACACCAGCTTTCATCATCATCACAAGATTTTGAATCAACAAACCATATTATCTCCCAAAACAAATTATTACTATCCTCATCAAATTACTACCACCCATTTTGTGACTATGAAGAACTTGGTTTCAATTATTCTAAGCATAATGATCTTGTCCTATCATCCACTGATGAAAAGGTTCAATTTGATCATAATGCTTTTGTGGGGGACTTATTGGATTTTGATGGCATGCAATGTTATGGTCAACAAAACTAA 996 0.3474 MENQRKAIEEELLRGRDMANQLLEVLVAHHKNSNNNNNDDDKGLMVLLPYGEDLVHQVLRSFTNSLLILNTSTITTTKIISGGVVDDDVFSDGGVVVDDPIKFRDFSSTTTFPNLHTKDNRSGRYKKRKSSVPTWEKDTPILIEDGHAWRKYGQKITMNSKYLRHYYRCTHKNDQGCPATKQVQRIKENPPLFRTTYFGHHTCKSTYYEESILEPQSFSGSSMLLSFNNNNNNNNNNNNIIITPSKEHAHQLSSSSQDFESTNHIISQNKLLLSSSNYYHPFCDYEELGFNYSKHNDLVLSSTDEKVQFDHNAFVGDLLDFDGMQCYGQQN 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241754g00005 331 SMART WRKY_cls 143 205 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc241754g00005 331 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 12 236 IPR044810 GO:0003700
Stsc241754g00005 331 Gene3D WRKY domain 129 206 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc241754g00005 331 Pfam WRKY DNA -binding domain 144 204 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc241754g00005 331 ProSiteProfiles WRKY domain profile. 138 206 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc241754g00005 331 SUPERFAMILY WRKY DNA-binding domain 140 204 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241754g00005 Stsc-Chr241754 39901 41870 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241754g00005 11 203 WRKY Transcription Factor Family AT3G56400 34.021 1.32e-26 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc241754g00005 WRKY 1.6e-23 CL0274