Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241754g00004 ATGGAGAATCACCATCATTATTCTTCAAAAGAAAGGAGGGAAACAATGGAGCAAGAGCTACTTAGAGGGCGTGACGTGGCAAATCAATTGCTTCAAGTTCTTGTTCATAGATCCAATAACAATGATGATGAACAAGGGTTGATGTTGATCCTGCCATTTGCTGAAGATCTTGTGCACCAAGTGCTAAGATCATTCACAAACACCCTTTTGCTCTTGAACACCTCCAATAATAATAATAATAATCATAATAATAGTAATATTGATGATGCAATTTTTCCTATCACTGTGAGAGATTCATCTTCCTCCTCCTCCTCCCCACCAAGTTGCCAAAAGCATGAGGATTTGGATATGGCTTGCAAAAGTTTCCGCACAAAAGATCGAAGAGGGCGCTACAAGAGAAAATCAACTGCACCAACTTGGGAGAGGGACAATCCTATTCTATTTGAAGATGGCCATGCATGGAGAAAGTACGGACAAAAGAAGACAATTAATTCAAAATTCCTCAGAAGCTACTACAGGTGCAGTCATAAGTATGAAGAGGGTTGCCCAGCAATTAAACATGTTCAAAGAATTCAAGAGAATCCTCCATTATACCGAACATCCTATTATGGTCATCACACTTGCAAGAATACCCTTTACAATAACGACGAATCATTTATTTTGGAACATGAATCTAAGTCTTCAATGTTCCTTAGCTTCAATAATAATAATAATAATAAGAGTATTATCACTGCTAGCAGCAAAGCAGAACAAATTTCATCACCAACTTTCAGATCATCAACAAAGCAAGAGCCAGTGGAGTTAGTGATTCATGATGATCATCGTAGTCAATTATATGATGATCAATATGAGGTTGATTTAGAATATTCTAGGCATGTTGTTGCTAAGCTATCATCATCATCACTATCACCATCTTGCATTGATGATAATACTAGTACTCTTCATAAGTTTGATGACAATAGTTATTATGATTCTGCTGGTGGATGGGACTTGGATTTTGATGGCTTGGCATGTTTTGGTGATCAAGATCAGATTATGATTATGCAAGAGGTTTAA 1056 0.3703 MENHHHYSSKERRETMEQELLRGRDVANQLLQVLVHRSNNNDDEQGLMLILPFAEDLVHQVLRSFTNTLLLLNTSNNNNNNHNNSNIDDAIFPITVRDSSSSSSSPPSCQKHEDLDMACKSFRTKDRRGRYKRKSTAPTWERDNPILFEDGHAWRKYGQKKTINSKFLRSYYRCSHKYEEGCPAIKHVQRIQENPPLYRTSYYGHHTCKNTLYNNDESFILEHESKSSMFLSFNNNNNNKSIITASSKAEQISSPTFRSSTKQEPVELVIHDDHRSQLYDDQYEVDLEYSRHVVAKLSSSSLSPSCIDDNTSTLHKFDDNSYYDSAGGWDLDFDGLACFGDQDQIMIMQEV 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241754g00004 351 SUPERFAMILY WRKY DNA-binding domain 144 209 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc241754g00004 351 ProSiteProfiles WRKY domain profile. 143 206 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc241754g00004 351 Gene3D WRKY domain 136 210 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc241754g00004 351 SMART WRKY_cls 148 210 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc241754g00004 351 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 17 235 IPR044810 GO:0003700
Stsc241754g00004 351 Pfam WRKY DNA -binding domain 149 209 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241754g00004 Stsc-Chr241754 34717 37644 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241754g00004 8 208 WRKY Transcription Factor Family AT3G56400 34.783 5.07e-29 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc241754g00004 WRKY 3e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241754g00004 - - aip:107610898 463.766