Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241753g00006 ATGGCAGAAGCAGGAGCTGCTCATCATGAACATCACCATGAATGCACTCATACGAGATATCCCAATCTATGTGATGAAACCTTGAAGGAGTTGGTGATGAGTTCAGGGAAGAATGATCATGAAAATGTTGATATCATTCTGGCTCTTGTAAATAAAACCATGTCTGAAACCAACTTGCCAACTTCATATTTTTCTTCATTTGTGACTACTCAGGATGATGTTCAACAAGACAAATCATCATCATCATCATCATCATCTTCATCAGTCGTAGGTTATTGTCAAGAGCTATTGGCCATGTCAATGAAGAGGTTGGACCAATCCATGAAAGCACTCACCAACCCTACAAGAAACAAGCAGGACATCCAAACATGGCTCAGCGCCTCCCTAACTTTCCAACAAACTTGCAGTGACTTCGCAAAATCACACGCCGCCACTGCCACTGCCACTGCCGCCGTAGAATCCATCTCCAAGAAGATGGACTATCTTTCTGCATTAGCCAGCAACTCACTTGCCCTCGTTAACCGAATCACTAGTACCGCCACCACTTCCGCCACCGCAACCCAAGATGAATTTCCCGAATGGGTTTCTTCACAAGGAAGAAAACTCCTCCAGGGAGGGCCACCCATAAAAGCGAACGCCGTGGTTGCGCAAGACGGTTCGGGGAACTACAAGACGATTTCTGAGGCGATTGCAGCGGCTACGGGCGGAAGGTTTGTGATTTATGTGAAAGCAGGGACTTACAAGGAGAAGATTCGGGCGAAGAAGAATGGTATAACGTTGATTGGAGAGGGTAAATATTCTACCGTTATTGTTGGCAGTGCTAGCGTCAAGGGTGGAGCTTCCTTGCCTGACACCGCCACATTCACAATATTTGGGGATGGATTCATTGCAAAAGACATAGGGTTCCACAACAACGCCGGCCCTCAAGGCGAACAAGCCGTGGCTCTCTACATAGCTTCAGACCGCGCCGTCCTCTTCCAATGCAGCATTGCCGGCTACCAAGACACCATCTACGCCCACTCCCTCCGCCAATTCTACAGAGAATGCGACATCTACGGCACCATCGACTTCATCTTTGGCAACGCCGCCGCCGTCTTCCAATCCTGCAACATCATGCTCCGCCGCCCCGCCCACGGCGGCTCCAACGCCATCCTCGCCAGCGGAAGAACCGATCCCGGACAAAACACTGGCTTCTCCCTTCACAAGTGCGCGATCTCGCCGAGCTCCGATCTGTCTCCGGTGAAACACTCCGTGCAGTCTTTCCTTGGGAGGCCATGGAAGGAATACTCTAGAGCTGTTGTGATAGGGTGTACCATTGATGACGTCATCGCGGCGCAGGGCTGGGAGCAGTGGCCTGGCTATGGAAGCTCGGTTTTGAAGTCGTTGTATTTTGGTGAGTATGGTAATTCAGGACCAGGTGCTGGAACTTCAGGCAGGGTTCGTTGGCCTGGTTATCATGTCATGGGTGCCATGGACGCCGGTAAGTTCACTGTTGGTAGCTTGATTGGCGGCGGTTCTTGGATTCCGTCCTCCGGGGTCGCTTTCATCAACGGCCTCTAA 1560 0.5083 MAEAGAAHHEHHHECTHTRYPNLCDETLKELVMSSGKNDHENVDIILALVNKTMSETNLPTSYFSSFVTTQDDVQQDKSSSSSSSSSSVVGYCQELLAMSMKRLDQSMKALTNPTRNKQDIQTWLSASLTFQQTCSDFAKSHAATATATAAVESISKKMDYLSALASNSLALVNRITSTATTSATATQDEFPEWVSSQGRKLLQGGPPIKANAVVAQDGSGNYKTISEAIAAATGGRFVIYVKAGTYKEKIRAKKNGITLIGEGKYSTVIVGSASVKGGASLPDTATFTIFGDGFIAKDIGFHNNAGPQGEQAVALYIASDRAVLFQCSIAGYQDTIYAHSLRQFYRECDIYGTIDFIFGNAAAVFQSCNIMLRRPAHGGSNAILASGRTDPGQNTGFSLHKCAISPSSDLSPVKHSVQSFLGRPWKEYSRAVVIGCTIDDVIAAQGWEQWPGYGSSVLKSLYFGEYGNSGPGAGTSGRVRWPGYHVMGAMDAGKFTVGSLIGGGSWIPSSGVAFINGL 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241753g00006 519 FunFam Pectinesterase 207 519 - -
Stsc241753g00006 519 Pfam Pectinesterase 212 504 IPR000070 GO:0030599|GO:0042545
Stsc241753g00006 519 NCBIfam pectinesterase inhibitor domain 14 176 IPR006501 GO:0004857
Stsc241753g00006 519 SUPERFAMILY Pectin lyase-like 208 517 IPR011050 -
Stsc241753g00006 519 ProSitePatterns Pectinesterase signature 1. 234 253 IPR018040 -
Stsc241753g00006 519 Gene3D Invertase/pectin methylesterase inhibitor family protein 10 177 IPR035513 -
Stsc241753g00006 519 Pfam Plant invertase/pectin methylesterase inhibitor 15 172 IPR006501 GO:0004857
Stsc241753g00006 519 CDD PMEI-like_3 15 176 - -
Stsc241753g00006 519 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 14 177 IPR035513 -
Stsc241753g00006 519 Gene3D - 207 519 IPR012334 -
Stsc241753g00006 519 PANTHER PECTINESTERASE 15 509 - -
Stsc241753g00006 519 SMART PMEI_2 6 172 IPR006501 GO:0004857
Stsc241753g00006 519 ProSitePatterns Pectinesterase signature 2. 351 360 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241753g00006 Stsc-Chr241753 98132 103076 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241753g00006 93 519 Carbohydrate Esterase AT2G45220 48.252 2.53e-131 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241753g00006 K01051 - gmx:100795439 635.565