Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241753g00004 ATGGCATTTCAAGATTTTGACATCATAAACGAACGGAGACAACAAGAAAGGAGGAAAAAGATAAGGAAGAGGATCGTCATCGGCCTAGTATCCACCATTCTTCTTGTATCCATCGTCGGCGCGGTCGCCTACGTCGGACTCAATTCTAAGTCCTCTGATGGCAGCCGCGACGGCAGAGGTGGGAGTACCAAAAGCAAACCATCGGCTAACAAGCCTCTCTCCTCCTCCTCCTCCTCCGACTCCACCTCGGCTTCAACCTCCTCAGCCAAATCAATAGAAGCATCATCCAAGATGGTGAAAGTCATATGCGAAGCTGCAGAGTACAAGGAGAAATGCGAAGGCGCGCTTGGTGATGCCGTTAAGAACGACTCGAGTATAACCCAACCCAAAGATCTCCTCAGAGTCTCCATAAAACTGGCTCAGGACGAGGTGGGAAAGGCCTTCGAGAAAACCAGCTCCTTGAATTTTGCATCCGATATGGACAAAGGAGCTTATGAAGATTGCAAGCAGCTATTCGACGACGCCAAGGAAGAACTCGGCCTCTCTATCAACGAGATTACCACCTCTGATGATCTCAAGAAGCTTTCCACAAAAGCACCTGAACTCAACAACTGGCTCAGTGCGGTTATCTCTTACCACCAAACCTGCATTGATGGCTTTCCTGAAGGGGAATTGAAGACCAAGCTTAAGGATCTCTTTAAGGATTCACAAGAATTCGTTAGCAATTCGCTTTCCATTGTAACGGCCGCGTCCACGGTGCTTTCTGCCGTGCAATCAGTTATCACTCGCCACTTGCTTTCGGAGAAGAACGGCAGCGCTCCTCATTGGATCAGCCGCGACGACCGGAGGATTCTGAAGGCGGCAGACGACAAGCTCATACCGAACGTCACTGTTGCAAAAGATGGAAGCGGCCAGTTCGCAACGATCTCTGAAGCCTTGGCAGCCCTCCCAGAAAAATATGATGGAAGGTACGTGGTTTACGTTAAAGAAGGAATATACGAGGAGACAGTGACAGTCACAAAGAGAATGGAAAATATGACAATGTATGGTGATGGATCACAAAAGAGTATCATCACTGGCAGCAAAAATTTTGTAGATGGAGTTAGGACTTTCCAAACAGCTACCTTTGTGGTGCTTGGAAACGGGTTCTTGGGGAAAGCAATGGGATATAGAAACACTGCTGGGGCAGAGAAGCATCAAGCAGTGGCAGCGAGAGTGCAAGCAGACCGTGCAATTTTCGTTAACTGTCGCTTCGAGGGCTTCCAAGACACACTATACGCCCAAACCCACCGCCAATTCTACCGGAGTTGCGTCATCTCCGGCACGGTCGACTTCATCTTCGGCGACGCAACCGCCATTTTCCAGAACTGCATCATGGCAATCAGAAAACCAATGGACAACCAACAAAACATCGTAACCGCTAATGGCAGGTTCGACCAGAAGGAGACAACCGGCTTCGTTCTGCAAAAGTGCGAGATCAAAGCCGACGACAGGCTTCCTCCCGAGCCGGACAAGATCAAGAGCTACCTTGGGAGGCCATGGAAGGAGTACTCCAGAACCATTGTAATGGAATCCGATATCGGCGACTTAATTAGCCCTGATGGGTGGATGCCTTGGGATGGTGACTTTGCATTGAACACATTGTATTATGGTGAGTTCAACAACACAGGGCCTGGTGGGAGCACCAATGCGAGGGTGAACTGGCTTGGGCATAAAATTCTTAGCAAAGATGAGGCTAGCAAGTTCACTGCAGGAACTTTCTTGGAAGGAGCATGGATTAGTGGTAGAGGTGTACCAGCTCAGTTGGGCATGTACAATTGA 1821 0.4915 MAFQDFDIINERRQQERRKKIRKRIVIGLVSTILLVSIVGAVAYVGLNSKSSDGSRDGRGGSTKSKPSANKPLSSSSSSDSTSASTSSAKSIEASSKMVKVICEAAEYKEKCEGALGDAVKNDSSITQPKDLLRVSIKLAQDEVGKAFEKTSSLNFASDMDKGAYEDCKQLFDDAKEELGLSINEITTSDDLKKLSTKAPELNNWLSAVISYHQTCIDGFPEGELKTKLKDLFKDSQEFVSNSLSIVTAASTVLSAVQSVITRHLLSEKNGSAPHWISRDDRRILKAADDKLIPNVTVAKDGSGQFATISEALAALPEKYDGRYVVYVKEGIYEETVTVTKRMENMTMYGDGSQKSIITGSKNFVDGVRTFQTATFVVLGNGFLGKAMGYRNTAGAEKHQAVAARVQADRAIFVNCRFEGFQDTLYAQTHRQFYRSCVISGTVDFIFGDATAIFQNCIMAIRKPMDNQQNIVTANGRFDQKETTGFVLQKCEIKADDRLPPEPDKIKSYLGRPWKEYSRTIVMESDIGDLISPDGWMPWDGDFALNTLYYGEFNNTGPGGSTNARVNWLGHKILSKDEASKFTAGTFLEGAWISGRGVPAQLGMYN 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241753g00004 606 MobiDBLite consensus disorder prediction 50 89 - -
Stsc241753g00004 606 PANTHER PECTINESTERASE 35 594 - -
Stsc241753g00004 606 Pfam Plant invertase/pectin methylesterase inhibitor 98 246 IPR006501 GO:0004857
Stsc241753g00004 606 Pfam Pectinesterase 295 590 IPR000070 GO:0030599|GO:0042545
Stsc241753g00004 606 Gene3D Invertase/pectin methylesterase inhibitor family protein 95 250 IPR035513 -
Stsc241753g00004 606 CDD PMEI-like_3 102 252 - -
Stsc241753g00004 606 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 97 248 IPR035513 -
Stsc241753g00004 606 NCBIfam pectinesterase inhibitor domain 84 248 IPR006501 GO:0004857
Stsc241753g00004 606 FunFam Pectinesterase 289 604 - -
Stsc241753g00004 606 FunFam Pectinesterase 95 251 - -
Stsc241753g00004 606 ProSitePatterns Pectinesterase signature 2. 439 448 IPR033131 -
Stsc241753g00004 606 Gene3D - 290 604 IPR012334 -
Stsc241753g00004 606 SMART PMEI_2 94 246 IPR006501 GO:0004857
Stsc241753g00004 606 SUPERFAMILY Pectin lyase-like 295 594 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241753g00004 Stsc-Chr241753 40943 43484 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241753g00004 1 606 Carbohydrate Esterase AT2G26450 48.544 0.0 608
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241753g00004 - - gmx:100784679 732.635