Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241753g00003 ATGGCTTCCACCACTCATAAACTCATCACCTTCTTCTTTTCCCTCACACTCTTTTTCTTCTCCTCACACACTCATCCTACTCTTGTTCACTCTTCAAATTCTTCCACACTATTCCACACCAATACTAATTTAAGATCTTTCTGCAAAACCACCCCTTACCCAGAAACATGCTTCGATTCACTCAAGCTTTCAATCTCAATAAACATAAGCCCAAACATCATAACCTACCTCCTTCACTCCCTCCAAGTCGCAATCTCCGAAGTCACAAAGCTTTCAACACTCTTCCACACTGATATTAACATCGTTGAGAAACAAAAGGGTTCAATCCAAGACTGCAAGGAGCTTCACCAATCAACTCTAACATCTCTAAAGAGATCCCTCTCCGGGGTTCGTAACTCACGAAGATTGGGTGATGCAAGAACCTACCTCAGTGCTGCTCTCACAAGCAAGAACACTTGTCTTGAAGGCCTAGATTCTGCTTCCGGACCCATGAAACAAAAGCTAGTAAACTCTGTCATCAACACTTACAAGCACGTGAGTAACTCCCTCTCAATGCTCTCTAATAATAATAATCAAGGCAGTGGTGATGAATTCTTGAAGGAAAGCTCTAACAATGATGGTGATGATGAGTATGATCCGAGCGAGGTGATTGTTGTGGCGAAAGATGGAACAGGGAACTTCAGCAGTGTGAGTGATGCAATAAACTTTGCTCCGAATAACAGCTATGAGAGGACAGTAATCTATGTGAGAGAAGGGGTTTATGAGGAAAATGTTGAGATCCCAACCTGGAAGACAAACATTGTTGTTGTTGGGGATGGGAGTGACGTCACTGTCATAACTGGTAGCAGAAGTGTTGGTGATGGATGGACCACTTTCAGATCTGCAACTCTAGCTGTATCTGGTGATGGCTTTCTGGCACGTGACATAGCATTTGAGAACAGTGCAGGCCCAGAGAAGCATCAAGCAGTTGCATTAAGAGTGAACGCAGATTTAACCGCTTTCTACCGGTGTTCCATTTATGGTTACCAAGACACACTCTATGTTCACTCCTTCAGACAATTCTACAGAGAATGCGACATTTACGGAACCGTAGATTTCATATTCGGTAACGCCGCCGTAGTTCTACAAGAATGTAACATTGTTTCTAGAAAGCCGTTACCCGGCCAATTCACCGTTGTAACTGCGCAATCGAGGGACACACCGGACGAGGACACCGGAATATCCATCCAGAACTGCTCTATCATAGCTGCAAATGATTTGTATGAAGCTAATTCAAACTCTAGCACCACTACCATTAAGAGCTACCTTGGTAGGCCATGGAGGGCTTACTCAAGAGTTGTTTATCTTGAGTCATACATTGATGAGTTTATTGACACAAAGGGTTGGTCAAAATGGTCTAATAGTGATGGTAATGAAGGGTTGGATACTCTGTATTATGGTGAGTATGAGAATTATGGACCTGGTTCAAGAACAAATGGACGTGTAAATTGGGGTGGGTACCATGTCATGGATTACAATGATGCTTATAACTTCACGGTTTCAGAGTTCATTACTGGTGATGCTTGGCTTGGGTCTACTTCTTTTCCTTATGATGATGGTATCTAA 1605 0.4293 MASTTHKLITFFFSLTLFFFSSHTHPTLVHSSNSSTLFHTNTNLRSFCKTTPYPETCFDSLKLSISINISPNIITYLLHSLQVAISEVTKLSTLFHTDINIVEKQKGSIQDCKELHQSTLTSLKRSLSGVRNSRRLGDARTYLSAALTSKNTCLEGLDSASGPMKQKLVNSVINTYKHVSNSLSMLSNNNNQGSGDEFLKESSNNDGDDEYDPSEVIVVAKDGTGNFSSVSDAINFAPNNSYERTVIYVREGVYEENVEIPTWKTNIVVVGDGSDVTVITGSRSVGDGWTTFRSATLAVSGDGFLARDIAFENSAGPEKHQAVALRVNADLTAFYRCSIYGYQDTLYVHSFRQFYRECDIYGTVDFIFGNAAVVLQECNIVSRKPLPGQFTVVTAQSRDTPDEDTGISIQNCSIIAANDLYEANSNSSTTTIKSYLGRPWRAYSRVVYLESYIDEFIDTKGWSKWSNSDGNEGLDTLYYGEYENYGPGSRTNGRVNWGGYHVMDYNDAYNFTVSEFITGDAWLGSTSFPYDDGI 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241753g00003 534 SUPERFAMILY Pectin lyase-like 213 531 IPR011050 -
Stsc241753g00003 534 Pfam Pectinesterase 217 520 IPR000070 GO:0030599|GO:0042545
Stsc241753g00003 534 PANTHER PECTINESTERASE 22 524 - -
Stsc241753g00003 534 SMART PMEI_2 39 185 IPR006501 GO:0004857
Stsc241753g00003 534 CDD PMEI-like_3 46 188 - -
Stsc241753g00003 534 Gene3D - 212 534 IPR012334 -
Stsc241753g00003 534 FunFam Pectinesterase 211 534 - -
Stsc241753g00003 534 NCBIfam pectinesterase inhibitor domain 16 188 IPR006501 GO:0004857
Stsc241753g00003 534 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 44 187 IPR035513 -
Stsc241753g00003 534 MobiDBLite consensus disorder prediction 184 200 - -
Stsc241753g00003 534 MobiDBLite consensus disorder prediction 184 210 - -
Stsc241753g00003 534 ProSitePatterns Pectinesterase signature 2. 360 369 IPR033131 -
Stsc241753g00003 534 Gene3D Invertase/pectin methylesterase inhibitor family protein 39 189 IPR035513 -
Stsc241753g00003 534 Pfam Plant invertase/pectin methylesterase inhibitor 44 185 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241753g00003 Stsc-Chr241753 36141 39749 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241753g00003 26 534 Carbohydrate Esterase AT2G26440 64.193 0.0 692
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241753g00003 - - aip:107630581 877.47