Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241752g00020 ATGTCCCTTCAACTCGGACAAACGCCGGCCATTGTTGTTTCTTCGGTCGATGTGGCCAAAGAAATCACCAAAAATCATGATGTTGTTTTCTCCAACAGGCCCCAAACAACATCCGAGAGAATCATCATGTATGGATGCAAGGATGTTGCTTTTGCACCCTACGGTGAAGAATGGAGACAGAAAAGGAAAATGTGTGTTCTTGAGCTTCTAAGCCTTAAAAGGGTGCGATCATTTCAATTCATTCGTGAAGAGGAGGTTGCCGAAATGGTTGGAAGCATACGTGAAGCATGTGGAAGCAAAAAAGAGACATGTTTGAACCTTAGTGAGTTGATGATTGCAACATCGAACAACATAGTTTCTAGATGTGTTCTTGGACAAAAGTATGATAACCCAGATGGTCATAACAGCTTTGGAGATCTTGGAAGGAAGATGATGAGAGAATTGGCAGCTTTTAGTGTGGGAGATTTCTTCCCTTTATTGGGTTGGATTGATTTTCTCACTGGTCAAATACAAGAATTCAAGTCCACTTTTAAGGCATTAGATTGTTTCTATGATAAGGTACTTGAAGAACATAGGAGGATGATGAAGAAAGGGAATAATGGTGATGATAGCCAAATGGATAATAAGAAAGACTTTGTTGATTTGCTCCTTCAAGTTCAAGAGGAAGGTGTGCATAATCATGGCTTCCACCTCTCCAATGATAATCTCAAAGCAATCCTAATGGACGTGTTCGCGGGAGGTGGTGACACTACTTCAACACTTTTGGAGTGGACATTTGTAGAATTGATTAAGAACCCAAACATCATGAACAAAGTTCAAGAAGAAATAAGAAGAGTTGTTGGGTGTAAGCCAAAAATAGATGAAAATGATATAAATCAAATGGAATACATGAAATGTGTCATCAAAGAAACCCTAAGGTTTCATCCACCAGCTCCTTTGTTAATACCCCGTGAAACCCTAAGTGATGTGAAGCTAAAAGGCTATGATATTCCATCAAAGACAAAGGTGTTTTTGAATGCATGGACAATTCAAAGGGACCCTGAAATTTGGAACAACCCTAATGAGTTCATTCCTGAGAGGTTTGAGAAAAGTCAAGTTGACTTTATGGGACAACATTTGGAACTTATACCCTTTGGTTTTGGAAGGAGGGGTTGTGTTGGAATTTCATTTGCAATTGCTTCCACTGAACATATTCTTGCTAATCTTCTATGTTGGTTTAATTGGAAGCTTCCCAATAATATGGAAGACATTGATATGGGTGAGGTATGGGGTCTCACTGTTTGCAAGAAAGAGCCACTGCATCTTCAGGCTAAACTATACAACCATATGGAGATCTAA 1338 0.3939 MSLQLGQTPAIVVSSVDVAKEITKNHDVVFSNRPQTTSERIIMYGCKDVAFAPYGEEWRQKRKMCVLELLSLKRVRSFQFIREEEVAEMVGSIREACGSKKETCLNLSELMIATSNNIVSRCVLGQKYDNPDGHNSFGDLGRKMMRELAAFSVGDFFPLLGWIDFLTGQIQEFKSTFKALDCFYDKVLEEHRRMMKKGNNGDDSQMDNKKDFVDLLLQVQEEGVHNHGFHLSNDNLKAILMDVFAGGGDTTSTLLEWTFVELIKNPNIMNKVQEEIRRVVGCKPKIDENDINQMEYMKCVIKETLRFHPPAPLLIPRETLSDVKLKGYDIPSKTKVFLNAWTIQRDPEIWNNPNEFIPERFEKSQVDFMGQHLELIPFGFGRRGCVGISFAIASTEHILANLLCWFNWKLPNNMEDIDMGEVWGLTVCKKEPLHLQAKLYNHMEI 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241752g00020 445 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 378 387 IPR017972 GO:0005506|GO:0016705
Stsc241752g00020 445 PRINTS E-class P450 group I signature 255 281 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc241752g00020 445 PRINTS E-class P450 group I signature 18 39 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc241752g00020 445 PRINTS E-class P450 group I signature 114 132 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc241752g00020 445 PRINTS E-class P450 group I signature 235 252 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc241752g00020 445 PRINTS E-class P450 group I signature 339 363 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc241752g00020 445 PRINTS E-class P450 group I signature 375 385 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc241752g00020 445 PRINTS E-class P450 group I signature 298 316 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc241752g00020 445 PRINTS E-class P450 group I signature 385 408 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc241752g00020 445 Pfam Cytochrome P450 2 426 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc241752g00020 445 PRINTS P450 superfamily signature 246 263 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc241752g00020 445 PRINTS P450 superfamily signature 299 310 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc241752g00020 445 PRINTS P450 superfamily signature 376 385 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc241752g00020 445 PRINTS P450 superfamily signature 385 396 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc241752g00020 445 Gene3D Cytochrome P450 1 444 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc241752g00020 445 PANTHER CYTOCHROME P450 71B11-RELATED 1 437 - -
Stsc241752g00020 445 FunFam Cytochrome P450 83B1 1 436 - -
Stsc241752g00020 445 SUPERFAMILY Cytochrome P450 2 437 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc241752g00020 445 CDD CYP71-like 1 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241752g00020 Stsc-Chr241752 107998 110313 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241752g00020 1 440 Cytochrome P450 AT3G48280 41.084 4.91e-121 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241752g00020 K20617 - cave:132175480 535.798