Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241752g00007 ATGTCTCTTGTCATATGGTTTAAGGAAGAAAGACTTATTACACCATTTTTCTTCATCTCCACACTAATTATTTTCCTCATTCTATCAACAAAGTTCCTCTTCACAAACAATTCAAGAAACAATAAGAAAAAAGCAAAATCCAAAAACAATAGAAATCTTCCTCCAAATCCACCAAAAATTCCCATAATTGGAAACTTCCACCAACTAGGCACAAACCCTCACATTTCTCTTCAAACCCTTTCACAAAAATATGGACCAATAATTCACCTCCAACTAGGTGAAGTCCCAACAGTGGTTGTTTCATCATCTAAGGTTGCAAAAGAAGTGCTTAAAACACATGATCTTGCACTTGCAAGCCGTCCACAACTATATTCAGCTAAGTACCTTTTCTACAATTGCACTAATGTTGTGTTCTCTCCCTATGGTGCTTATTGGAGGCATATTAGGAAGATTTGCATACTTGAGCTTCTAAGTTCCAAAAGAGTACAATCATGTAGTTCTATTAGGGAACAAGAAGTTGCTCGTTTAGTTCAAAGGGTTGCGGAGTCTTGTCCAGGAACATGTAATCTTTCTAGGATGCTTGGATTGTATGCAAACGATATTCTTTGTCGCGTCGCGTTCGGGAGAGATTTTTCGGTAGATGGAGAGTACCAAAAACATGGATTCCAAAAGATGCTTGATGAGTACCAAGAACTACTTGGAGGGTTCAGTGTTGGTGACTTCTTTCCTTCATTGGAGTTCATCCACAGCTTAACCGGCGCGAAATCGAGGCTTAAAGAAACTTCTAGAAGATTCGATCAGCTATTTGATCAGATATTGGATGAACATAAGGGATGCAATGATAATAATAAGATGGATGAAGAAAAGGATCTTGTTGATGTTTTGCTTGAAGTGCAGAAGAATGGCTCACATGAAATGCCTCTCACCACTGATAATATCAAAGCAATTATATTGGACATGTTTGCTGCAGGAACTGATACAACCTTCATTACCCTAGATTGGGGAATGACAGAGCTTCTAATGAATCCACAAGTTATGAGAATGGCACAAAAGGAAATTAGAAACATCATGGGAGAAAGAAGAGTTGTCCTAGAGAGTGATCTTCACCAATTCCACTACATGAAAGCAATTATCAAAGAAGTGTTCCGGCTACACCCTCCGGTGCCGGTTTTAGTCCCGAGAGAATCCATGGAAGACATAGTCCTAGAAGGATACGAAATCCCCGCGAGGACAAGATTCTTTGTCAATGCTTGGGCTATAGGAAGGGATCCTGAGAGTTGGGAAGATCCTAATGAGTTCAAACCGGAGAGGTTCTTAGGAAGCGATGTTGATTATAAAGGGAATGATTTCGAGTTGATTCCGTTTGGTGCTGGAAGAAGAGGGTGTCCTGCGATTGCGTTTGCGACCGCAGTTATTGAGCTTGCTCTGGCTCAGTTGCTACATAGTTTTGATTGGGAGCTTCCTCATGGTGTTAAAGTTGAAGATTTGGACCTCAGTGAAGTTTTTGGAATCTCCATGCATAGAAGAGAAAATCTTCATGTTGTTGCTAAGCCATATTTTCCATAA 1566 0.4004 MSLVIWFKEERLITPFFFISTLIIFLILSTKFLFTNNSRNNKKKAKSKNNRNLPPNPPKIPIIGNFHQLGTNPHISLQTLSQKYGPIIHLQLGEVPTVVVSSSKVAKEVLKTHDLALASRPQLYSAKYLFYNCTNVVFSPYGAYWRHIRKICILELLSSKRVQSCSSIREQEVARLVQRVAESCPGTCNLSRMLGLYANDILCRVAFGRDFSVDGEYQKHGFQKMLDEYQELLGGFSVGDFFPSLEFIHSLTGAKSRLKETSRRFDQLFDQILDEHKGCNDNNKMDEEKDLVDVLLEVQKNGSHEMPLTTDNIKAIILDMFAAGTDTTFITLDWGMTELLMNPQVMRMAQKEIRNIMGERRVVLESDLHQFHYMKAIIKEVFRLHPPVPVLVPRESMEDIVLEGYEIPARTRFFVNAWAIGRDPESWEDPNEFKPERFLGSDVDYKGNDFELIPFGAGRRGCPAIAFATAVIELALAQLLHSFDWELPHGVKVEDLDLSEVFGISMHRRENLHVVAKPYFP 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241752g00007 521 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 455 464 IPR017972 GO:0005506|GO:0016705
Stsc241752g00007 521 Gene3D Cytochrome P450 38 519 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc241752g00007 521 PANTHER CYTOCHROME P450 71B11-RELATED 28 517 - -
Stsc241752g00007 521 PRINTS P450 superfamily signature 376 387 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc241752g00007 521 PRINTS P450 superfamily signature 323 340 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc241752g00007 521 PRINTS P450 superfamily signature 453 462 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc241752g00007 521 SUPERFAMILY Cytochrome P450 54 518 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc241752g00007 521 CDD CYP71-like 83 512 - -
Stsc241752g00007 521 Pfam Cytochrome P450 54 510 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc241752g00007 521 FunFam Cytochrome P450 99A2 42 517 - -
Stsc241752g00007 521 PRINTS E-class P450 group I signature 197 215 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc241752g00007 521 PRINTS E-class P450 group I signature 332 358 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc241752g00007 521 PRINTS E-class P450 group I signature 81 100 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc241752g00007 521 PRINTS E-class P450 group I signature 312 329 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc241752g00007 521 PRINTS E-class P450 group I signature 452 462 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc241752g00007 521 PRINTS E-class P450 group I signature 105 126 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc241752g00007 521 PRINTS E-class P450 group I signature 416 440 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc241752g00007 521 PRINTS E-class P450 group I signature 462 485 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc241752g00007 521 PRINTS E-class P450 group I signature 375 393 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241752g00007 Stsc-Chr241752 27629 30265 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241752g00007 48 520 Cytochrome P450 AT3G26330 43.305 7.62e-147 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241752g00007 - - qsa:O6P43_022628 739.569