Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241750g00014 ATGGCTAATCCTGAGCGGACTAGTGAGCTGAGCACTAGACCAATCCAAGTTGCCTCTTATGTCATATCCCCACCACCAAATGTTTCGTGTTCCTTCAATAATTCAGAAAGACATGCTTTGATACAGAGCGGTTGGTGGAGTCATTACCACAGTGTCTTAAACCATTGCAACTGGACCGGCATCGGCTGTGATGAAACTGGAAATGTCTTACATATTAATGGATCACAATTGGATATTAATCCCGATTCATTGATTCTACAGAACTTGAACCTCACTGCCTTCCCCAATTTGGTCTCTCTGGATCTTCATGGAATGGGGCTTACAGGAACTATCCCCAAAGAAGTTGGCACTCTCACAAAGCTTGTCAGTCTTGATATGTCCCAAAATTATCTCTATGGTGAGTTGCCTCCAACACTTTCAAACCTCACTCAACTTAGAGACTTTGATGTTTCAGAAAATTCTTTTAGTGGCAGCATTCCTTCTACTTTTGGTCAATTGGAGGAGTTAACCTCTCTCTCTCTTGATTCAAACCAAATCGAAGGTCCTATACCACTAGAACTAGGGAGTTTGAAATATCTCCAAGTATTGTCTATTTCAAATAATTTACTTAATGGTTCAATTCCCTCTACTTTGGGACAGTTGCAGAGCTTAACACTTCTTGGCCTTGATTTAAACCAAATAGAAGGTCCTATACCACTACAACTAGGGAATTTGAAACATATTGAAGTATTGTCTCTTTCATTTAATTTTCTTAGTGGTTCAATTCCCTCTACTTTGGGACAGTTGCAGAGTTTAACATTTCTTGACCTTGCTAGAAACCAAATACAAGGTCCTATACCACTACAACTAGGGAATTTGACAAGGTTATATTATTTAGATCTCTCCAATAATTTGTTGACAGGCATAATTCCTTCAACTTTAGGACAGTTAGTGAAGTTGAATAATCTCAACCTTGGATCAAATCAAATTGGAGGTTCTATATCGATACAGATAGGGAATCTAACAAGCTTAGTGTTTTTAGATCTTTCGGAGAACTACTATTCTGGTTCAATCCCCTTTCAAATAGGAGCTTTAACTAAGTTAAAAGAGTTGTACATAGAACTCAATCAAATTAATGGTTCTATTCCTCCACTATTTACAAATTTGTCTAATTTAGAAAATTTAGATCTTTCTCATAATAAGTTGTCCGGTGTTATTCCTCCACAACTTTTTCTACTTCCCTTCTTGGACCCTTCACTTCTCTCATCAAATCAGTTGTCTGGTACAATACCATCAGATTTTGCAGACACAAGTATTTCATATCTAGATCTCTCTCACAACAAGCTAATAGGATCTATTCCATTTGCTATTGATATTTGTTCCCCAGGGTTAGGAACACTAGACTTAAGCTGCAACTTGTTGAATGGAAGCATTACTTCCCAAGCTGGTTGTGTTTCTGACCTTAACCTTAGTCATAATTTTCTTCAAGGTGAGATCCCATTTTTGTTTGTAGAGAATAAAAGGCTAAAGAGTTTGGATCTTAGTTATAACAACTTCACAGGTATATTGCACAAGGAACTTGCTGCAATAAGCTATATAAACCTTTCATACAATTCCTTTGACTTTTCTCGAGACATTGCCATGGAGTCAGAGTTACCTAACTATTGTTATTTTAGCCAAGACTCCTTAATCAGTTGCAATACACCGAACTTCACATCCTGCCATTATTCTGTCCCAGAAACTAGTAACATAAAGAACCTCCTTATAATGTTTCTTCCTGTCACCTGCACCATTCTCTTTGTCATAATTCTAGCAACATTGCTCTTTGCAAGACGCATCAAAAGTAGAAAAATTGAGGAATTGAAAGCAAAGAATGGAGACTTGTTTTCCATATGGAACTATGATGGGAAAATTGCATTTGAAGACATCATTGAAGCAACACAGGACTTTGATATCAGATACTGCATAGGAACTGGTGCATATGGCAGTGTGTATAGAGCACAACTTCCAAGTGGCAAAGTTGTTGCATTGAAGAAACTTCACCAAAGGGAGTCTCAAAATCCATCTTTTGACAAGAGCTTCCGCAACGAGGTAAAGATGTTATCACAAATCCGTCATAGAAACATTGTCAAGCTTCATGGATTTTGTCTCCACAATCGGTGCATGTTTCTAATTTATGAATACATGGAAAGAGGAAGCTTGTTTTGTGCCTTGAGAATTGATGAAGAAGCTGAGGAGCTAAGTTGGAGCCAAAGGGTGAATATACTTAGCGGAACGGCGAATGCTTTGGCTTACATGCATCATGATTGTTCGCCACCAATAGTTCACAGAGATGTAACAAGCAGCAACATTTTGTTGAACTCAGAGTTGCATGCTGTTGTCTCAGACTTTGGCACTGCTAGACTTCTTGATCCTGATTCTTCAAACCAAACCTTGCAAGTTGGAACATATGGATATCTTGCTCCAGAATTGGCCTACACAATGACTGTGACAGAAAAATGTGATGTATACAGTTTTGGAGTGGTGGCATTGGAAACATTAATGGGAAGACACCCGGGAGATCTAATCTTGTCTTTGTTAGATTCTTCTAACAAAAACATAATGGTAAAAGATATCTTGGATTCACGAATCCGTTTACCATTATGTCAAAAAGACACTGAAGCAATAGTTGAGGTGGTAAAATTGGCATTGGCATGCTTGCACTCTAATCCAAATCCAAGACCATCAATGCAGCAAGTGGCTCATCAACTTTCCAATTTTAAACAATCATCACTTCCTTTTTCTTTCTCTGAAATCACAGTCCATCAATTGATAGCATAG 2799 0.3805 MANPERTSELSTRPIQVASYVISPPPNVSCSFNNSERHALIQSGWWSHYHSVLNHCNWTGIGCDETGNVLHINGSQLDINPDSLILQNLNLTAFPNLVSLDLHGMGLTGTIPKEVGTLTKLVSLDMSQNYLYGELPPTLSNLTQLRDFDVSENSFSGSIPSTFGQLEELTSLSLDSNQIEGPIPLELGSLKYLQVLSISNNLLNGSIPSTLGQLQSLTLLGLDLNQIEGPIPLQLGNLKHIEVLSLSFNFLSGSIPSTLGQLQSLTFLDLARNQIQGPIPLQLGNLTRLYYLDLSNNLLTGIIPSTLGQLVKLNNLNLGSNQIGGSISIQIGNLTSLVFLDLSENYYSGSIPFQIGALTKLKELYIELNQINGSIPPLFTNLSNLENLDLSHNKLSGVIPPQLFLLPFLDPSLLSSNQLSGTIPSDFADTSISYLDLSHNKLIGSIPFAIDICSPGLGTLDLSCNLLNGSITSQAGCVSDLNLSHNFLQGEIPFLFVENKRLKSLDLSYNNFTGILHKELAAISYINLSYNSFDFSRDIAMESELPNYCYFSQDSLISCNTPNFTSCHYSVPETSNIKNLLIMFLPVTCTILFVIILATLLFARRIKSRKIEELKAKNGDLFSIWNYDGKIAFEDIIEATQDFDIRYCIGTGAYGSVYRAQLPSGKVVALKKLHQRESQNPSFDKSFRNEVKMLSQIRHRNIVKLHGFCLHNRCMFLIYEYMERGSLFCALRIDEEAEELSWSQRVNILSGTANALAYMHHDCSPPIVHRDVTSSNILLNSELHAVVSDFGTARLLDPDSSNQTLQVGTYGYLAPELAYTMTVTEKCDVYSFGVVALETLMGRHPGDLILSLLDSSNKNIMVKDILDSRIRLPLCQKDTEAIVEVVKLALACLHSNPNPRPSMQQVAHQLSNFKQSSLPFSFSEITVHQLIA 932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241750g00014 932 Pfam Protein kinase domain 648 908 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241750g00014 932 SUPERFAMILY RNI-like 207 561 - -
Stsc241750g00014 932 ProSiteProfiles Protein kinase domain profile. 643 911 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241750g00014 932 SUPERFAMILY L domain-like 29 325 - -
Stsc241750g00014 932 ProSitePatterns Protein kinases ATP-binding region signature. 649 671 IPR017441 GO:0005524
Stsc241750g00014 932 ProSitePatterns Tyrosine protein kinases specific active-site signature. 767 779 IPR008266 GO:0004672|GO:0006468
Stsc241750g00014 932 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 185 279 - -
Stsc241750g00014 932 FunFam Nuclear pore complex protein NUP107 28 184 - -
Stsc241750g00014 932 FunFam Leucine-rich repeat receptor protein kinase MSP1 606 721 - -
Stsc241750g00014 932 Gene3D Transferase(Phosphotransferase) domain 1 722 922 - -
Stsc241750g00014 932 PANTHER LEUCINE RICH REPEAT KINASE 2 222 914 - -
Stsc241750g00014 932 Gene3D Phosphorylase Kinase; domain 1 603 721 - -
Stsc241750g00014 932 Gene3D Ribonuclease Inhibitor 291 563 IPR032675 -
Stsc241750g00014 932 Gene3D Ribonuclease Inhibitor 30 184 IPR032675 -
Stsc241750g00014 932 SMART LRR_typ_2 238 262 IPR003591 -
Stsc241750g00014 932 SMART LRR_typ_2 286 309 IPR003591 -
Stsc241750g00014 932 SMART LRR_typ_2 500 522 IPR003591 -
Stsc241750g00014 932 SMART LRR_typ_2 118 142 IPR003591 -
Stsc241750g00014 932 SMART LRR_typ_2 310 334 IPR003591 -
Stsc241750g00014 932 SMART LRR_typ_2 166 190 IPR003591 -
Stsc241750g00014 932 SMART LRR_typ_2 358 381 IPR003591 -
Stsc241750g00014 932 SMART LRR_typ_2 382 406 IPR003591 -
Stsc241750g00014 932 ProSiteProfiles Leucine-rich repeat profile. 384 406 IPR001611 GO:0005515
Stsc241750g00014 932 Pfam Leucine rich repeat 288 345 IPR001611 GO:0005515
Stsc241750g00014 932 FunFam MDIS1-interacting receptor like kinase 2 722 916 - -
Stsc241750g00014 932 SUPERFAMILY Protein kinase-like (PK-like) 629 910 IPR011009 -
Stsc241750g00014 932 SMART LRR_sd22_2 286 307 - -
Stsc241750g00014 932 SMART LRR_sd22_2 358 387 - -
Stsc241750g00014 932 SMART LRR_sd22_2 262 283 - -
Stsc241750g00014 932 SMART LRR_sd22_2 118 144 - -
Stsc241750g00014 932 SMART LRR_sd22_2 166 187 - -
Stsc241750g00014 932 SMART LRR_sd22_2 310 336 - -
Stsc241750g00014 932 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 312 560 - -
Stsc241750g00014 932 PRINTS Leucine-rich repeat signature 382 395 - -
Stsc241750g00014 932 PRINTS Leucine-rich repeat signature 289 302 - -
Stsc241750g00014 932 Gene3D Ribonuclease Inhibitor 185 282 IPR032675 -
Stsc241750g00014 932 CDD STKc_IRAK 649 910 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241750g00014 Stsc-Chr241750 110124 121768 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241750g00014 58 815 Receptor kinase-like Gene Family AT4G08850 34.828 4.16e-150 468
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc241750g00014 Pkinase 2.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241750g00014 - - aprc:113851126 1019.61