Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241750g00002 ATGAACAATTGGTTAGGGAAACTAGGAAAAGAAGAAGCTCTTCTAGTTGATGATGATGCTTCAAACCAAATTTTAACTACTAGGGTTGTGGCTCTAAGAGATTGTGCTAATCTCTATGAGGAGAGTGAGTATAGGCTTTCTTACATGATGACCTCAATGATGAATAGTAGCAATAATTATTATTATGACAATGATGATGCACTTACTTGGGTTAGTGGGGTGATGACAAACCACAAAACTTGTTTGGATGGATTGAAGGAAAAAGGGTATGTCGGTGTTGATGATGATGAGGTTTTGCAAAGTGGAAACTTGACCATGTTGCTTGACGAAGCTCTTGATTTGTATGCTAAGAGAAAAGGCAAAGCAAAAGCAAAAGCAAAAGGAGCACCACAAAGACAAAGAGCATTTTCCAGATCATCACCAAGTAATAATGGTGGAATCTTAGCATCATGGAATCCATCAACACACAAAGCAGAGTTCATAGTATCACAAGATGGTTCAGGAACACACAGAACAATAAGAGATGCAGTGGAAGCAATTGCTGCTTCAAGGGGTAGTAGCAGCCATGAAGAAAGAACAATTGTTTATGTGAAAGCAGGTGTGTACCATGAGAAAGTAGTGATTGGAAGCAAATTGCAGAATGTGATGTTTGTTGGAGATGGCATGGACAGAACCATTGTCACTGGAAGCAGAAGTGTTGTTGATGGTTCCACCACTGTTGGTTCAGCCACATTTGATGTATATGGAGATGGATTTTGGGCAAGAGACATGACATTCGAGAACACAGCAGGATCAATAAAGCACCAAGCAGTAGCATTAAAATCAAGCTCCGACTTATCAGTTTTCTACAGATGCAGATTCAGAGCATATCAAGACACATTATTCGTCCACTCTAATCGCCAATTCTACCGAGATTGCCAGATCCTCGGAACCATAGATTTCATATTCGGAGATGCCACGGTTGTGATTCAAAACAGTGACATCTATGTGAGGAAACCAATGTTGTCCCAATCAAACTATGTCACAGCACAGGGGAGAGATGATCCTAGAAAACCAACTGGGATTTCAATAATTAATTGTAGGATTAGGCCAGCAAATGATTTGGGTTCATCTGGGGGTTCAATCAAGACATTCTTGGGGAGGCCATGGAAGAGGTATTCAAGGACTGTGGTGATGAAGAGTGATTTGGATGGGTTAATTAATCCTAGAGGGTGGGGTGAATGGGATGGTGAATTTGCAATTAGGACATTGTATTATGGTGAGTATATGAATTATGGGAATGGTGCTAATGTGAGGAATAGGGTGAATTGGCCTGGGTTTCATGTTTTGAGTAGTGCTAATGAGGCTTATGCTTTTAGTGTGAGTGAGTTCTTGCAAGGTGGTAGGTGGATTCCTGCTTCTGGGGTTCCATTTTCCTCTGGGATTTAA 1428 0.4083 MNNWLGKLGKEEALLVDDDASNQILTTRVVALRDCANLYEESEYRLSYMMTSMMNSSNNYYYDNDDALTWVSGVMTNHKTCLDGLKEKGYVGVDDDEVLQSGNLTMLLDEALDLYAKRKGKAKAKAKGAPQRQRAFSRSSPSNNGGILASWNPSTHKAEFIVSQDGSGTHRTIRDAVEAIAASRGSSSHEERTIVYVKAGVYHEKVVIGSKLQNVMFVGDGMDRTIVTGSRSVVDGSTTVGSATFDVYGDGFWARDMTFENTAGSIKHQAVALKSSSDLSVFYRCRFRAYQDTLFVHSNRQFYRDCQILGTIDFIFGDATVVIQNSDIYVRKPMLSQSNYVTAQGRDDPRKPTGISIINCRIRPANDLGSSGGSIKTFLGRPWKRYSRTVVMKSDLDGLINPRGWGEWDGEFAIRTLYYGEYMNYGNGANVRNRVNWPGFHVLSSANEAYAFSVSEFLQGGRWIPASGVPFSSGI 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241750g00002 475 Pfam Pectinesterase 160 460 IPR000070 GO:0030599|GO:0042545
Stsc241750g00002 475 ProSitePatterns Pectinesterase signature 2. 308 317 IPR033131 -
Stsc241750g00002 475 Gene3D Invertase/pectin methylesterase inhibitor family protein 15 117 IPR035513 -
Stsc241750g00002 475 PANTHER PECTINESTERASE 24 465 - -
Stsc241750g00002 475 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 29 91 IPR035513 -
Stsc241750g00002 475 CDD PMEI-like_4 19 115 - -
Stsc241750g00002 475 Pfam Plant invertase/pectin methylesterase inhibitor 27 109 IPR006501 GO:0004857
Stsc241750g00002 475 FunFam Pectinesterase 153 475 - -
Stsc241750g00002 475 SUPERFAMILY Pectin lyase-like 155 474 IPR011050 -
Stsc241750g00002 475 MobiDBLite consensus disorder prediction 123 149 - -
Stsc241750g00002 475 Gene3D - 153 475 IPR012334 -
Stsc241750g00002 475 MobiDBLite consensus disorder prediction 133 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241750g00002 Stsc-Chr241750 30123 34701 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241750g00002 30 475 Carbohydrate Esterase AT3G60730 53.763 3.36e-179 510
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241750g00002 K01051 - gmx:100792852 572.778