Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241749g00018 ATGGAAGAAAAAGATATCTTTAGTTCTGGGCATGCGGTTAAGGCTGATGAGGCTCCAGGGGGCTTCCACGTGGCACCAAGAAGTGAAAATATACAGTTTTCCGCACCCACGACGGAGCCGCCGCCGCAGCCGGTGGTTCCGGGCACTGCTATGGTGGCAGTAACACCGGCGACAGGGGCGGATGGGAAGAAGAAGAGAGGAAGGCCTAGAAAGTATGGACCGGACGGCAAGTTGACGCCGGAGGCGGCGGCAAAGGCGCTGTCACCGATGCCGATATCGGCGTCGATTCCGTTGACCGGAGAGTTCTCAGGGTGGAAAAAGGGTAGAGGAAAGGCTGTTGAATCAATGAAGAAGTCTTATAAATTTTTTGAGGCTGAAAATGCTGGAGGACCAGGTAATGGAATTGCATACTCAGTTGGTGCCAACTTCACACCACACATTCTTACAGTAAATGCTGGCGAGGATGTTACTATGAAGATTATGTCCTTCTCTCAAGACGGATCCCGCGCCATATGCATTCTCTCTGCCAATGGCACAATTTCAAATGTTACGCTCCGTCAACCAACTTCTTCCGGTGGTACTTTAACATACGAGGGACGCTTCGAGATTCTTTCCTTGTCTGGCTCGTATATGCCAACCGAGAACGGATTCACAAGGAGCAGATCTGGTGGGATGAGTGTCTCTTTGGCAGGTCCAGATGGCCGAGTAATGGGAGGAGGACTTGCCGGTTTGCTGGTTGCTGCAGGTCCTGTTCAGGTTGTTGTTGGTAGTTTCATTCCAGGTCACCAGCTAGAACAACATAAACAAAAGAAGCAAAGAGTGGAACATCATAATATATCATCTACTATATCTCCTACACTTAATGTTCCTACTATTTCTGCTGAAGAAATAAAGATAAGTCTTGGTGGAGTGAAGCCTTTCATGACACCCCCTTCCATTCCTTTTCAAGTCGAAAACAATCCTCCCGGTTTCGTCAACGGCCAATGTTCTTTGAACTCATCTGGTGACGACGACGAAGAAGAAGATGCTTCTTTGCATGAGAAAGAATCTAATCCTAGTCTTTCAGATCCTGCTGGAGTTGCATGCTAA 1089 0.483 MEEKDIFSSGHAVKADEAPGGFHVAPRSENIQFSAPTTEPPPQPVVPGTAMVAVTPATGADGKKKRGRPRKYGPDGKLTPEAAAKALSPMPISASIPLTGEFSGWKKGRGKAVESMKKSYKFFEAENAGGPGNGIAYSVGANFTPHILTVNAGEDVTMKIMSFSQDGSRAICILSANGTISNVTLRQPTSSGGTLTYEGRFEILSLSGSYMPTENGFTRSRSGGMSVSLAGPDGRVMGGGLAGLLVAAGPVQVVVGSFIPGHQLEQHKQKKQRVEHHNISSTISPTLNVPTISAEEIKISLGGVKPFMTPPSIPFQVENNPPGFVNGQCSLNSSGDDDEEEDASLHEKESNPSLSDPAGVAC 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241749g00018 362 MobiDBLite consensus disorder prediction 319 333 - -
Stsc241749g00018 362 FunFam AT-hook motif nuclear-localized protein 1-like 145 276 - -
Stsc241749g00018 362 MobiDBLite consensus disorder prediction 266 285 - -
Stsc241749g00018 362 SUPERFAMILY AF0104/ALDC/Ptd012-like 142 263 - -
Stsc241749g00018 362 ProSiteProfiles PPC domain profile profile. 140 280 IPR005175 -
Stsc241749g00018 362 MobiDBLite consensus disorder prediction 1 77 - -
Stsc241749g00018 362 MobiDBLite consensus disorder prediction 319 362 - -
Stsc241749g00018 362 Pfam Plants and Prokaryotes Conserved (PCC) domain 145 258 IPR005175 -
Stsc241749g00018 362 CDD DUF296 144 258 IPR005175 -
Stsc241749g00018 362 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 39 326 IPR039605 GO:0003680
Stsc241749g00018 362 Gene3D - 145 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241749g00018 Stsc-Chr241749 106914 111218 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241749g00018 45 274 AT-hook Motif Nuclear Localized (AHL) Family AT5G62260 62.712 1.01e-91 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241749g00018 - - gmx:102667678 416.772