Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241749g00005 ATGCCTTCCCTTCCTCTCTCTAACGCCGCTGTTCACGACAAAAAACACAAATCCAAAAAGGAAAAGAAAGAAACCACCACCTCCAACAACAACAACAACGATGCAGTCGCTCACCAGCTAAACGACGCCGTTTCTGAATCCAAGAAGAAGAGCTCCAAGAAGAGGAAGAAGGTTTCCTCTGATGAGGATGAGGACGATCAGAAGAGTGAGACTAGCTCTGAGCTCGTTGAGCCTCAGAATGATGAAGGCTTGAAATCCAAGGACAAGAAGAAGAGTAAGAAGGAGAAGAACAAGAAGGCTAAGTTGGATATGAATGAGGAAGAGGAGGAGGAAGAAGAGGTTCTCAAGAAGGAGGAGGATCCTAATGCCATTACTAACTTCAGAATCTCTGAGCCTCTTAGGGCAAAGCTTAAGGAGAAGGGAATTGAGTCTCTCTTCCCGATTCAAGCCATGACCTTCGATATTATCCTCGATGGCTCTGATTTGGTTGGTCGTGCTCGCACCGGTCAGGGTAAAACACTGGCTTTTGTGTTGCCCATACTAGAGTCTTTAATCAACGGTCCTGCCAAAGCGTTCAGAAAGACTGGTTTTGGGAGGTCTCCAACTGTCCTTGTTCTTTTACCCACCAGGGAATTGGCAAGTCAGGTGTATGCTGATTTTGAAGTTTATGGTGGAGCAATGGGATTGAGTTCTTGCTGTTTATATGGTGGAGCTCCATACCAGACTCAAGAGAGTAAGCTCAGGAGAGGTGTTGATATTGTTGTTGGCACACCGGGTCGTGTGAAGGATCATATAGAGAGGCAAAATATTGACTTGAGCCAGCTAAAGTTCCGTGTCCTTGATGAGGCTGACGAGATGCTCAGGATGGGTTTTGTTGAAGATGTTGAACTAATTCTAGGCAAGGTACAAGATGTTACCAAAGTTCAGACACTTCTTTTCAGTGCTACTTTGCCAGACTGGGTTAAGCATATTTCTGGGAAGTTTCTGAAACCAGATAAGAAAACTGCAGATCTGGTTGGAAATGCAAAAATGAAGGCTAGCACCAATGTTAGACATATTGTTCTTCCATGTAACGTTTCTGCCAGGGCCCAGCTTATCCCAGACATTATACGCTGTTATAGCAGTGGAGGCCGGACTATTATATTTACTGAGAAAAAGGAGTCTGCTTCTGAGCTTGCCGGGTTGTTGCCTGGAGCAAGAGCTCTACATGGTGATATACAGCAATCACAACGAGAGGTTACACTGTCTGGTTTTAGGTCTGGGAAATTCATGACTTTGGTTGCCACAAATGTGGCTGCGAGGGGTTTAGATATTAATGATGTTCAGTTAATTATCCAGTGTGAGCCTCCGCGTGATGTAGAAGCCTACATTCATCGATCTGGGCGCACAGGAAGAGCAGGTAATACTGGAGTTGCTGTAATGCTTTACGATCCCAGACGATCAAATGTATCTAAAATAGAAAGGGAATCCGGTGTGAAATTTGAACACATATCTGCCCCTCAGCCTGACGATATTGCCAAAGCCGTTGGTGGAGAAGCTGCTGAGATGATTACCCAAGTGTCTGATAGTGTGATTCCTGCGTTCAAGTCTGCGGCTGAGGAGCTTTTGAACAACTCTGGTTTATCAGCTGCTGATCTACTTGCTAAAGCTCTTGCCAAGGCTGTGGGTTTTACTGATATAAAGAAAAGATCACTTTTGACTTCCATGGAAAACTATGTTACACTGCATATTGACATTGGAAAACCTATGTTCACTCCATCATTTGTATTTGGAATCCTAAGGAGATTCTTGCCCGAGGAGCAGGTTGAGGCAGTTCAGGGTCTAACACTCACCGCAGAGGGAAATGGTGCAGTGTTTGATGTACCAGCCAAGGATTTAGACATTTATCTTACTGGTCAGGAGAAAGCTGGTAATGTAAGGTTAGAGGTGTTGAAAACATTACCACGTTTGCAAGAAAGAGAGCAACCAAGAGGGGGCAGATTTGGTGGCGGTCGAGGGTTTAATGATAGAAATGGTGGGAACAGGTTTGGAAGAGGCGGTGGCAGGAACGGTAGATTCGGCCAGAACGATAGGTTTTCGAATGGGAGAGGTAATTTTAACAAAGGTGGAAAGAGATGGTAA 2121 0.4488 MPSLPLSNAAVHDKKHKSKKEKKETTTSNNNNNDAVAHQLNDAVSESKKKSSKKRKKVSSDEDEDDQKSETSSELVEPQNDEGLKSKDKKKSKKEKNKKAKLDMNEEEEEEEEVLKKEEDPNAITNFRISEPLRAKLKEKGIESLFPIQAMTFDIILDGSDLVGRARTGQGKTLAFVLPILESLINGPAKAFRKTGFGRSPTVLVLLPTRELASQVYADFEVYGGAMGLSSCCLYGGAPYQTQESKLRRGVDIVVGTPGRVKDHIERQNIDLSQLKFRVLDEADEMLRMGFVEDVELILGKVQDVTKVQTLLFSATLPDWVKHISGKFLKPDKKTADLVGNAKMKASTNVRHIVLPCNVSARAQLIPDIIRCYSSGGRTIIFTEKKESASELAGLLPGARALHGDIQQSQREVTLSGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRRSNVSKIERESGVKFEHISAPQPDDIAKAVGGEAAEMITQVSDSVIPAFKSAAEELLNNSGLSAADLLAKALAKAVGFTDIKKRSLLTSMENYVTLHIDIGKPMFTPSFVFGILRRFLPEEQVEAVQGLTLTAEGNGAVFDVPAKDLDIYLTGQEKAGNVRLEVLKTLPRLQEREQPRGGRFGGGRGFNDRNGGNRFGRGGGRNGRFGQNDRFSNGRGNFNKGGKRW 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241749g00005 706 Coils Coil 90 118 - -
Stsc241749g00005 706 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 279 287 IPR000629 -
Stsc241749g00005 706 MobiDBLite consensus disorder prediction 10 27 - -
Stsc241749g00005 706 CDD SF2_C_DEAD 350 476 - -
Stsc241749g00005 706 CDD GUCT_RH7_like 563 648 - -
Stsc241749g00005 706 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 364 506 IPR001650 -
Stsc241749g00005 706 MobiDBLite consensus disorder prediction 1 118 - -
Stsc241749g00005 706 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 153 335 IPR014001 -
Stsc241749g00005 706 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 88 536 - -
Stsc241749g00005 706 Pfam GUCT (NUC152) domain 556 651 IPR012562 GO:0003723|GO:0004386|GO:0005524
Stsc241749g00005 706 FunFam DEAD-box ATP-dependent RNA helicase 7 573 645 - -
Stsc241749g00005 706 Gene3D - 68 335 IPR027417 -
Stsc241749g00005 706 Gene3D - 351 572 IPR027417 -
Stsc241749g00005 706 Pfam Helicase conserved C-terminal domain 368 467 IPR001650 -
Stsc241749g00005 706 SMART helicmild6 390 467 IPR001650 -
Stsc241749g00005 706 SMART ultradead3 141 353 IPR014001 -
Stsc241749g00005 706 MobiDBLite consensus disorder prediction 653 706 - -
Stsc241749g00005 706 SUPERFAMILY RNA-binding domain, RBD 560 643 IPR035979 GO:0003676
Stsc241749g00005 706 Pfam DEAD/DEAH box helicase 146 323 IPR011545 GO:0003676|GO:0005524
Stsc241749g00005 706 CDD DEADc 133 330 - -
Stsc241749g00005 706 Gene3D - 573 645 - -
Stsc241749g00005 706 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 200 479 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241749g00005 Stsc-Chr241749 15371 19847 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241749g00005 107 473 Eukaryotic Initiation Factors Gene Family AT1G72730 30.831 4.37e-40 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241749g00005 K16911 - qsa:O6P43_008295 920.228