Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241747g00017 ATGGGGAAAAAAGGAGGCTGGTTTTCGTCGGTGAAGAAAGTTTTCAAGTCCTCATCATCGTCATCTTCTTCTTCTTCTAAGAATTTGTTGCCAGCTCCGGCGCCGGCTAAAAAGAAGGACAACAACTCAGGGAAGAAACTGCAGCACCAAGTACCAGCAGCAGAAGTTGTGCCTTTTGAGCGGTTTCAAGCAGAGACTTCACAACATGTCACAATTGAGGACAGTGCCACGTCATCATCGCCAGTGGCTGAAGACAGGAATCATGCTATTACGGTTGCGGCGGCAACTGCAGCTGCGGCCGAGGCTGCAGTGGTGGCTGCCCAGGCCGCAGCTAGAGTTGTGAGACTAGCGGGTTATGGGCGGCACTCCAAGGAAGAGAGAGCGGCAACACTCATTCAGTCATACTACAGGGGCTACCTGGCACGACGCGCTTTGCGTGCATTGAAGGGACTAGTGAGATTACAAGCTCTGGTGAGGGGACACAACGTGAGGAAGCAAGCGCAGATGACAATGCGGTGTATGCAAGCATTAGTAAGAGTGCAAGCAAGAGTCAGAGCTCGCAGGATTCAGCTCAATCACCAGAAGCATCATCATCATCATCAGAAGACGGTGGAAAAGCATCATCATCATGAACATGATTATGATATTGATGATGACGATGACGATGATGATGATGAGCAAGTGCAAGTTCATCAGAAGCAGCCAGTGCCCAACAACAACAAGCTTACTATGATGAGCCCCATGAGAAGGTTAGATAATAATAATAATGACACTAATAATAGTTGGGACAATAGGCATCAAAGTATCCAGAAGGTTAGGGAAAATGATTTGAGGAAACATGATGCTGCAATCAAGAGGGAGAGAGCTCTTGCTTATGCTTTCAACTCCCAACACCACCAGCAAGCACAGAAACAATACATGCAAACAGCATCAAATAGTGATGATATGGGAACTTATTATCCCAATGAGCGTGAAAAAACCCAATGGGGTTGGAACTGGTTAGAGCGTTGGATGTCATCTCAACCTCACAATGTTAAGCACGTGGGCCCACGTGACACCCCTTACATGAATCTTGCTTCAACAACCTCAACCACAACAGATAACATGTCTGAGAAAACTGTTGAAATGGACAAGGTTGCAACTCCAGGCCCAACCAATAATAATCTCAACATGGGCCTAACAAGCCAAGACTATGTTGATCAAAGCCCAGTTCCAAGTAGACAGTACCAAAGACCTCCAAGCCCAGGTAGGCCGAGCTATATGGCACCCACGCAGTCTGCGAAAGCCAAGGTTCGGGATCAAGGCCCGATCAAGCCACGGGCCTCTCCTGGGCCACAGTGGAACTCGTCCACAAAGGGGGTTTCTGTTACAGGCTCGGGCTGTGACTCGTCTAGCTCGGGTGGAACAACAAGTTACCAATATACAAGAAGCCCAAGCCCAAAGATTAATGGGTTTCGTCCTCAATCTAGAAGGATAGTTAGTAGCAACCCAGATTCCATTGAAGACTGGGCAATTCAACTTGGAACCCATGGTTGGACATAA 1542 0.4786 MGKKGGWFSSVKKVFKSSSSSSSSSSKNLLPAPAPAKKKDNNSGKKLQHQVPAAEVVPFERFQAETSQHVTIEDSATSSSPVAEDRNHAITVAAATAAAAEAAVVAAQAAARVVRLAGYGRHSKEERAATLIQSYYRGYLARRALRALKGLVRLQALVRGHNVRKQAQMTMRCMQALVRVQARVRARRIQLNHQKHHHHHQKTVEKHHHHEHDYDIDDDDDDDDDEQVQVHQKQPVPNNNKLTMMSPMRRLDNNNNDTNNSWDNRHQSIQKVRENDLRKHDAAIKRERALAYAFNSQHHQQAQKQYMQTASNSDDMGTYYPNEREKTQWGWNWLERWMSSQPHNVKHVGPRDTPYMNLASTTSTTTDNMSEKTVEMDKVATPGPTNNNLNMGLTSQDYVDQSPVPSRQYQRPPSPGRPSYMAPTQSAKAKVRDQGPIKPRASPGPQWNSSTKGVSVTGSGCDSSSSGGTTSYQYTRSPSPKINGFRPQSRRIVSSNPDSIEDWAIQLGTHGWT 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241747g00017 513 ProSiteProfiles IQ motif profile. 149 176 IPR000048 GO:0005515
Stsc241747g00017 513 MobiDBLite consensus disorder prediction 380 407 - -
Stsc241747g00017 513 ProSiteProfiles IQ motif profile. 125 153 IPR000048 GO:0005515
Stsc241747g00017 513 MobiDBLite consensus disorder prediction 345 497 - -
Stsc241747g00017 513 MobiDBLite consensus disorder prediction 192 247 - -
Stsc241747g00017 513 Gene3D - 126 167 - -
Stsc241747g00017 513 MobiDBLite consensus disorder prediction 192 206 - -
Stsc241747g00017 513 SMART iq_5 147 168 IPR000048 GO:0005515
Stsc241747g00017 513 SMART iq_5 124 146 IPR000048 GO:0005515
Stsc241747g00017 513 MobiDBLite consensus disorder prediction 16 50 - -
Stsc241747g00017 513 MobiDBLite consensus disorder prediction 355 370 - -
Stsc241747g00017 513 Pfam Protein of unknown function (DUF4005) 403 457 IPR025064 -
Stsc241747g00017 513 MobiDBLite consensus disorder prediction 16 30 - -
Stsc241747g00017 513 MobiDBLite consensus disorder prediction 231 247 - -
Stsc241747g00017 513 Pfam IQ calmodulin-binding motif 126 146 IPR000048 GO:0005515
Stsc241747g00017 513 Pfam IQ calmodulin-binding motif 152 167 IPR000048 GO:0005515
Stsc241747g00017 513 PANTHER IQ-DOMAIN 5-RELATED 1 463 - -
Stsc241747g00017 513 MobiDBLite consensus disorder prediction 443 497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241747g00017 Stsc-Chr241747 114995 121768 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241747g00017 1 481 IQD Protein Family AT3G49260 45.418 2.76e-88 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241747g00017 - - adu:107495204 657.907