Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241745g00022 ATGGCGGATCATGGTGAGGAGGGTGGTGGTGGTTTATTCAATGGGAATGTTAGTTCAGTGCTAGCTGGGATGGGTTCAGCGGTGGTTGTGCTGCTAATATACCGTTGCATGTCCATGTTTTTGTGCATCCGCAACAATAATCCTGATGAGATGAACGCAACAAGCAGCGAACAAGTAGAGGTGGCGGAATCATCTAGCAGTTTGAATAATTGGGTGTCGCATATGATCCCATCCCACAAGTACGAGAAGAAGAACGACAAGGATGATGATGATGATTGCATATGTGCAGTGTGCTTGGGAGAGTTCGAGGAGGGTGAGGAGTTGAGGAGTATGCCAGAGTGCATGCACTCTTTCCATGTCCCGTGCATTGATATGTGGCTCCGTTCCCATTCAAGTTGTCCCCTTTGCCGTGCTCATGCCACACCTTCCTCTTCTTCTTCTTCCAATAATGTTAACAACAATCACACCACCATTCATATGGATTTCATGCAACATATTCTTCTCCACCAAGCTCCCCATGCACCCTCGCTTTGA 534 0.4738 MADHGEEGGGGLFNGNVSSVLAGMGSAVVVLLIYRCMSMFLCIRNNNPDEMNATSSEQVEVAESSSSLNNWVSHMIPSHKYEKKNDKDDDDDCICAVCLGEFEEGEELRSMPECMHSFHVPCIDMWLRSHSSCPLCRAHATPSSSSSSNNVNNNHTTIHMDFMQHILLHQAPHAPSL 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241745g00022 177 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 22 141 IPR044675 -
Stsc241745g00022 177 Pfam Ring finger domain 95 137 IPR001841 -
Stsc241745g00022 177 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 51 143 IPR013083 -
Stsc241745g00022 177 ProSiteProfiles Zinc finger RING-type profile. 95 137 IPR001841 -
Stsc241745g00022 177 SMART ring_2 95 136 IPR001841 -
Stsc241745g00022 177 SUPERFAMILY RING/U-box 75 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241745g00022 Stsc-Chr241745 97465 97998 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241745g00022 21 149 C3H Transcription Factor Family AT5G17600 37.063 1.84e-21 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241745g00022 - - ahf:112782505 205.682