Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241745g00020 ATGGAGTCTGGTGAGAGTGGGGGTTCGTCGATTCGAGAGGTGCGTGCAAATGGAAACAGCATTAAAACATCAGAAGTTGAGGCCAAGCTTGATGAAGGGAATATTCAAGAAGCAGAATCAGCATTGCGAGAAGGCTTGTCTCTCAATTTTGAGGAAGCAAGAGCTCTTCTTGGAAAGCTAGAGTATCAACGAGGTAATGTCGAAGGGGCTCTTCGTGTGTTTGATGGGATTGATCTTAAAGCATCAATACAGCGACTGCAATCTTCCCTTTCTGATAAACCAGCCAAGAAAGGAGGTGGCTCATCTTCCACGTCCTCACAGCATGCTGCTAGTTTGGTGCTCGAAGCCATCTTCTTAAAATCCAAGTCTCTACAAAAACTGGGAAAGTTTACTGATGCTGCTAGTGAGTGCAAGCGTGTGCTTGATGCTGTTGAGAAGATGTTTTCTCAGGGTATACCCGATGTCCAAGTGGACAATAAATTACAAGAGATAGTTAGCCATGCCGTAGAGCTCCTTCCAGAGCTTTGGAAACAGGCTGGTTGCTATCCCGAGGCAATATCTGCATATAGGAATGCCCTTCTTAGTCAATGGAACCTTGATAATGATTGCTGTGCAAGAATTCAGAAAGCATTTGCTATGTTTTNNNNNNNNNNCAGTGGGGTGGAGGCAAATCCACCAAGTTTGGCAGTTCAGACTGAAGGCTCATATGTACCTAAAAATAATCTGGAAGAGGCAATACTACTTCTAATGATTCTTGTGAGAAAGTTTTGTCTTGGTAAGACGAAATGGGACCCCTCAGTAATGGAACATCTGACATTTGCACTTTCAGTATGTGGCCAAACCTCTGTTTTAGCAAAACAATTTGAAGAGTTGATTCCTGGTGTATATCATCGTATTGACCGTTGGAATTCATTAGCAATGTGTCTCAGTGCAGCTGGACAAAACAAATCTGCATTGGATCTGCTAAGAAAGTCTCTGCACCGACATGAACGACCAAATGACATGATAGCATTGTTATTGGCTGCTAGAATTTGCAGTGAGGATCCTCATCTTGCTGCAGAGGGTGTAGGCTATGCACAGAGGGCAGTCAATAATGCTAAGGGTCTAGACGAGCATTTAAAAGGTGTAAGCCTTCGGATGTTGGGAATTTGCCTGGGAAAGCAAGCTAAGGTTGCTTCCTCTGACTACGAGAGGTCTCATCTTCAGGCCAAAGCTCTTCAATCATTGGACGAGGCAGCTAGATTGGAGCAAAAGAATTCTGATATAATTTTTGAGTTAGCTGTTCTATATGCAGAGCACCGGAATCTGTCAGCAGCTTCACGCTATGCATGGAAGTTCTTTGAGGAAACTGGTGGATCTGTATTGAAAGGATGGAGATTGCTTGCTCTAGTTTTTTCTGCACAGAAAAGATTTTCAGAGGCTGAAGGGGTGACTGATGCTGCTTTAGATCAGACTGCAAAATGGGAGCAAGGTCCACTTCTCAGGTTGAAAGCGAAGCTGAAGATCTCCCAATCACGACCCACGGATGCTATTGAAACTTACCGATTCCTTCTTGCATTGGTTCAAGCCCAGAGGAAATCCTTTGGACCTCTCCGAATTAGTTCACAGGTGGATGACAAGGTAGACGAATTTGATGTCTGGCACGGCCTTGCAAATTTATATGCAAGCCTTTCTCACTGGAAGGATGCTGAAATATGTTTGCAAAAGGCCAGAGAATTAAAGGAGCACTCAGCAGCTACCGCACACACTGAAGGTGTTATGTTAGACGGTCGCGGACAAGATCAAGAAGCTCTGGCCACTGCAACAAATGCCACACTACTTGAATCAAGCCATGTTCCTAGCAAGATATTGATGGGTTCTTTGATGATGAAAATGGGTCCGAAAGCTTTGCCTGCTGCTAGAAGTCTGCTTACCGATGCACTCAGAGTCGAACCAACAAATCGTATGGCTTGGTATCACTTGGGACTGACACACAAGTCTGACGGTCGAATGGCCGATGCTGCTGATTGCTTCCAGGCAGCATTCATGCTGGAAGAAACAGATCCCGTTGAAAGTTTCAGCACTATGCTCTGA 2073 0.4452 MESGESGGSSIREVRANGNSIKTSEVEAKLDEGNIQEAESALREGLSLNFEEARALLGKLEYQRGNVEGALRVFDGIDLKASIQRLQSSLSDKPAKKGGGSSSTSSQHAASLVLEAIFLKSKSLQKLGKFTDAASECKRVLDAVEKMFSQGIPDVQVDNKLQEIVSHAVELLPELWKQAGCYPEAISAYRNALLSQWNLDNDCCARIQKAFAMFXXXXSGVEANPPSLAVQTEGSYVPKNNLEEAILLLMILVRKFCLGKTKWDPSVMEHLTFALSVCGQTSVLAKQFEELIPGVYHRIDRWNSLAMCLSAAGQNKSALDLLRKSLHRHERPNDMIALLLAARICSEDPHLAAEGVGYAQRAVNNAKGLDEHLKGVSLRMLGICLGKQAKVASSDYERSHLQAKALQSLDEAARLEQKNSDIIFELAVLYAEHRNLSAASRYAWKFFEETGGSVLKGWRLLALVFSAQKRFSEAEGVTDAALDQTAKWEQGPLLRLKAKLKISQSRPTDAIETYRFLLALVQAQRKSFGPLRISSQVDDKVDEFDVWHGLANLYASLSHWKDAEICLQKARELKEHSAATAHTEGVMLDGRGQDQEALATATNATLLESSHVPSKILMGSLMMKMGPKALPAARSLLTDALRVEPTNRMAWYHLGLTHKSDGRMADAADCFQAAFMLEETDPVESFSTML 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241745g00020 690 Gene3D Tetratricopeptide repeat domain 206 527 IPR011990 GO:0005515
Stsc241745g00020 690 ProSiteProfiles TPR repeat profile. 648 681 IPR019734 GO:0005515
Stsc241745g00020 690 Coils Coil 398 418 - -
Stsc241745g00020 690 Gene3D Tetratricopeptide repeat domain 531 684 IPR011990 GO:0005515
Stsc241745g00020 690 MobiDBLite consensus disorder prediction 1 24 - -
Stsc241745g00020 690 SUPERFAMILY TPR-like 28 353 IPR011990 GO:0005515
Stsc241745g00020 690 Pfam Tetratricopeptide repeat 632 674 - -
Stsc241745g00020 690 SUPERFAMILY TPR-like 494 678 IPR011990 GO:0005515
Stsc241745g00020 690 SMART tpr_5 455 488 IPR019734 GO:0005515
Stsc241745g00020 690 SMART tpr_5 114 147 IPR019734 GO:0005515
Stsc241745g00020 690 SMART tpr_5 544 577 IPR019734 GO:0005515
Stsc241745g00020 690 SMART tpr_5 648 681 IPR019734 GO:0005515
Stsc241745g00020 690 SMART tpr_5 299 332 IPR019734 GO:0005515
Stsc241745g00020 690 MobiDBLite consensus disorder prediction 1 28 - -
Stsc241745g00020 690 PANTHER PROTEIN NPG1 9 687 IPR043376 -
Stsc241745g00020 690 SUPERFAMILY TPR-like 114 439 IPR011990 GO:0005515
Stsc241745g00020 690 Gene3D Tetratricopeptide repeat domain 20 198 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241745g00020 Stsc-Chr241745 90006 94117 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241745g00020 11 690 Calmodulin-binding Proteins AT2G43040 70.785 0.0 963