Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241745g00015 ATGGACGACAGGTCCTCATCAGATCAGGTTGTTGTCTTCATTGACCAGCATGATAACCACCCCAAACCCCCCTCCTCCTCCTCCTCCATGGATGAGGCTGAGGGGAACAACAAGCCCCCCAAACGACAACCCTCCTTGAGGGTCAAAACCCTTAACCGTCTCAGCTTCTCCAAGCCCAAATCCAGAATCCTCGAATACTATCCCCACCACCACCTCGGCAAGAAGCTATCAACCATTTCTCACGAGAACAACAGCAGCGACGATAACAGTGAGGACGTGGATGAAGAAGCGGATGAAGAGTGGTGGGATGAGGAAGAAGAAGAAGAAGGTGAGGGAGAAAGGAGTAGTAAGTTGCAGCAGAGGAATAGGAGGAAGAAGGTGAGGTGGAGGGTGGTGGTGGAGTGGGTGATGTTCATGAGCATAGCAACATGCTTGGTGTGTTCGCTGGTAATAACGCGGATAAAGAAGATGCACGTGGGAGGTTTGGAGACATGGAAGTGGTGCCTGATGGTGATGGTGACATTCAGCGGGAGGTTGGTGTCCGGGTGGGTGGTGGGAGTAACCGTGTTCATGATAGAGAGGAACTTCATGCTGAGGGAGAAGGTGTTGTACTTCATATACGGGCTGAGGAAGAGCATAAGGAACTGCCTGTGGCTTGGTCTGGTGCTTCTCTCATACTGGAGCGTGGTGTTCGACGACGTGCAGAAGAGGAACCACAAGTTCCTTAACAAGGTGTTTCAGGGTCTGGTGGCAGTTTTGGTTGGTGCTATCATATGGCTTGTCAAGATTGTTCTGGTCAAGATGCTGGCCTCCTCTTTCCATGTGGCCACCTACTTCGACAGGATGAAGGAGAGCGTGTTCCATCACTACATCCTGGACACTCTGTCAGGTCCACCCATGGAGGATGCGGAGCAGCACCGGGTGCTGACATCATCAAAAACGATGCCGGTAGGGGCCCAGGGCAAGAGTAGGTTGAAGAAGAGGAAGCAGCAGGAGAGGGGTTCTGGGAGTAATCGGATTGACATGGAGAAGCTGAGGGAGCTGAGCATGGAGAGCAGTGGGTCAGCGTGGAGCGTGAAGAGGCTGGTGAACTATATTAGGTCGTCAGGGCTGTCCACAATCTCAAAGACTGTGGATGATTTCACGACGGCAGAGTCTGAGATCAGCAGTGAATGGGAAGCTAGAAGTTGCGCTCAGAGGATTTTCAACAACGTCGCCAAACCTTCTGCCAAGTATATTGAAGAGGAGGATCTGATGAGATTTCTGAAGAGGGTGGAGATACATACCATATTCCCTCTGTTCGAAGGTGCCCTTGAAACAGGGAAGATCAGCAGGTCTTCATTTAGAAATTGGGTGATTCGAGCATACTACGAACGGAAAGCACTAGCACAATCACTGAATGATACAAAAACAGCAGTACAGCAGCTTCACAAACTGGCAAGCGCTATAGTGAGTGTGATAATAATCATAGTGATCCTTTTGGTGATGGGTGTGGCTACTCTCAAGATCATATTCTTCTGCATGACTCAAATCGTCTTGATTGGCGTTGCCTTCCAAGGTACCTGCAAGACCGTCTTGGAGGCCATCATCTTCGTCTTTGTCATGCACCCTTTTGACATTGGAGACCGCTGCGTCATTGACGGCGTTCATATGATTGTGGAAGAGATGAATATCTTGACCACAGTGTTTCTCAGATACGACAATGAGAAAATATACTACCCTAATGCAGTTCTGCTCAATAAGCCAATCAGCAATTTTTACAGGAGCCCAGAGATGTGGGATGCTATTGATTTCACCATTGATGCTTCTACTCCCATCGACACTATCATTGCGCTCAAGAAATCAATACAAAACTACATTGAGAGCAAGCCAAAGTATTGGAATCCAAAGCACAGTGTGATAGCAAAAGAAATACAGAATGTGGACAAGCTCAAGCTCTGCTTGTGCGTGCAACACACAATCAATCATCAGAACTATGGCGAAAGGAGCATTAGGATAACTGAGCTCCTCCTGGAACTGAAAAAGATCTTTGAGATTCATGCTGTCAAGTACAATCTCCTCCCTCAGGAGATCCACATTACCCACATGAGCATGCAAAATAATACTTTAAGTAGTGCCAACGGCACCGGACTTGTCTTTCAATCATGA 2148 0.4823 MDDRSSSDQVVVFIDQHDNHPKPPSSSSSMDEAEGNNKPPKRQPSLRVKTLNRLSFSKPKSRILEYYPHHHLGKKLSTISHENNSSDDNSEDVDEEADEEWWDEEEEEEGEGERSSKLQQRNRRKKVRWRVVVEWVMFMSIATCLVCSLVITRIKKMHVGGLETWKWCLMVMVTFSGRLVSGWVVGVTVFMIERNFMLREKVLYFIYGLRKSIRNCLWLGLVLLSYWSVVFDDVQKRNHKFLNKVFQGLVAVLVGAIIWLVKIVLVKMLASSFHVATYFDRMKESVFHHYILDTLSGPPMEDAEQHRVLTSSKTMPVGAQGKSRLKKRKQQERGSGSNRIDMEKLRELSMESSGSAWSVKRLVNYIRSSGLSTISKTVDDFTTAESEISSEWEARSCAQRIFNNVAKPSAKYIEEEDLMRFLKRVEIHTIFPLFEGALETGKISRSSFRNWVIRAYYERKALAQSLNDTKTAVQQLHKLASAIVSVIIIIVILLVMGVATLKIIFFCMTQIVLIGVAFQGTCKTVLEAIIFVFVMHPFDIGDRCVIDGVHMIVEEMNILTTVFLRYDNEKIYYPNAVLLNKPISNFYRSPEMWDAIDFTIDASTPIDTIIALKKSIQNYIESKPKYWNPKHSVIAKEIQNVDKLKLCLCVQHTINHQNYGERSIRITELLLELKKIFEIHAVKYNLLPQEIHITHMSMQNNTLSSANGTGLVFQS 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241745g00015 715 MobiDBLite consensus disorder prediction 88 111 - -
Stsc241745g00015 715 Pfam Mechanosensitive ion channel 478 681 IPR006685 GO:0016020|GO:0055085
Stsc241745g00015 715 MobiDBLite consensus disorder prediction 77 119 - -
Stsc241745g00015 715 MobiDBLite consensus disorder prediction 1 54 - -
Stsc241745g00015 715 PIRSF Memb_At2g17000 3 710 IPR016688 -
Stsc241745g00015 715 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 20 701 IPR016688 -
Stsc241745g00015 715 MobiDBLite consensus disorder prediction 312 342 - -
Stsc241745g00015 715 FunFam Predicted mechanosensitive ion channel 537 586 - -
Stsc241745g00015 715 MobiDBLite consensus disorder prediction 20 34 - -
Stsc241745g00015 715 SUPERFAMILY Sm-like ribonucleoproteins 528 586 IPR010920 -
Stsc241745g00015 715 Gene3D - 537 586 IPR023408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241745g00015 Stsc-Chr241745 66256 69898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241745g00015 21 694 Mechanosensitive Ion Channel Family AT5G12080 43.224 0.0 561
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241745g00015 K22048 - gmx:100813521 975.696