Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241744g00027 ATGAGTTGGAGTTCATGGTTGCATGCAAATAATTCTGCATCATCAACCACTAACAAGAAGCTGAAGGGTGTTAGGCGTAGAAAATGGGGTAAATGGGTGTCGGAGATTCGTGTTCCGGGAACCCAAGAGCGTCTCTGGTTGGGAACATACGCAACGCCGGAGGCAGCTGCGGTGGCTCACGACGTTGCCGTTTATTGCCTGAGAAGGCCTTCTTCTTTAGAGAAGATTAACTTCCCTGAAACTTTGTCTTCTTATCATCAATGCATTCAGTTCAGAGAGGATTTGTCACCGAGATCCGTTCAGAAGGTGGCTTCAGATGTTGCCATGGATGTTGATGCTCGCAACATTAATGGAAGCTCATCAGTAACGCCGCCTGCTACCGCTACCGCCGCCGCGACCGCCTCCAATGCGATGGTAGAAACTAGTAGTAGCCGTTATGATGTGTCTTGGTGGGAAGGTTTGGGTGGTGATGATGGTAGTGGTGGAGCTTGCCATGGAAGTAATAGTAATAGTAGTGAAGATAATAATCATGGTGGTGGACAAGGGAATCAGCCCTTGAGCATTTCCATTGAAGATTATCTTTAA 585 0.4752 MSWSSWLHANNSASSTTNKKLKGVRRRKWGKWVSEIRVPGTQERLWLGTYATPEAAAVAHDVAVYCLRRPSSLEKINFPETLSSYHQCIQFREDLSPRSVQKVASDVAMDVDARNINGSSSVTPPATATAAATASNAMVETSSSRYDVSWWEGLGGDDGSGGACHGSNSNSSEDNNHGGGQGNQPLSISIEDYL 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241744g00027 194 SUPERFAMILY DNA-binding domain 20 79 IPR016177 GO:0003677
Stsc241744g00027 194 CDD AP2 19 81 IPR001471 GO:0003700|GO:0006355
Stsc241744g00027 194 MobiDBLite consensus disorder prediction 1 22 - -
Stsc241744g00027 194 Gene3D AP2/ERF domain 20 81 IPR036955 GO:0003700|GO:0006355
Stsc241744g00027 194 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 15 130 - -
Stsc241744g00027 194 MobiDBLite consensus disorder prediction 163 188 - -
Stsc241744g00027 194 PRINTS Ethylene responsive element binding protein signature 43 59 IPR001471 GO:0003700|GO:0006355
Stsc241744g00027 194 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700|GO:0006355
Stsc241744g00027 194 MobiDBLite consensus disorder prediction 159 194 - -
Stsc241744g00027 194 Pfam AP2 domain 20 69 IPR001471 GO:0003700|GO:0006355
Stsc241744g00027 194 SMART rav1_2 20 85 IPR001471 GO:0003700|GO:0006355
Stsc241744g00027 194 MobiDBLite consensus disorder prediction 1 19 - -
Stsc241744g00027 194 ProSiteProfiles AP2/ERF domain profile. 20 79 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241744g00027 Stsc-Chr241744 124526 125110 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241744g00027 16 113 AP2-EREBP Transcription Factor Family AT1G71520 61.000 2.25e-38 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc241744g00027 AP2 6.7e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241744g00027 - - adu:107488358 261.151