Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241744g00026 ATGGGGTGCATTTGCTCAAAACAAAAGTATAGAATTGATGGTGAACATAAGAAACAAAAAGTGCCCAACAAGAATCAGAATGGTGCATTACAAATTGAAATTGTTGCACCTTCAGTCTCAACTACTACCTTTCCTAATCCACAATCAAGTGGCCTTCATGGTTTAATGGTGCCTCAATTGGCCAAATCATATGCACAAATGGCTATGCCAGCAATATTAGAAGATAAAACCAACCACTTATTGTTGGATACTGCACAACAAAAGCAACAAAAAAGACAGCAGCACCAGAGATGTAAAACAGTAGGAAGTGGTGAAAATGGAGTACTAGCTGAAAGAAAATCAGTTCTGAGAAGAATACTCAGCGTGTCGCATATCTCCGGTGAGAACGTTGATGCCGGATGGCCGACTTGGTTATCTTCTGTGGCCGGAGAAGCCATCAAAGGGTGGCTTCCTCGACGAGCAGACTCCTTCGAAAAATTAGAGCAAATTGGACAAGGGGCTTATAGCAGTGTTCATAAAGCACTTGACCTTGAAACTGGTAAATTTGTGGCTCTCAAAAAGGTTAGATTCTTGAGCAGTGATCCGGCAAGCGTTCGATTCATGGCGAGGGAAATCCATATATTAAGGCAACTAGATCATCCCAATGTGATCAAGCTTGAAGGTCTTGTTGCATCTAGAACTTCCACCAGCTTGTACCTTGTTTTTGAATACATGGAGCATGATCTTGCTGGATTAGCATCCACTCCTGGAATCAAGTTCACTGAATCACAGATTAAGTGCTTTATGCAGCAACTACTTAGGGGGCTTGAGCACTGCCATAGTCGCGGTGTGCTGCACCGCGACATCAAGGGTTCCAATCTTCTAATTGACAACAATGGAAACCTTAAGATAGGAGATTTTGGTCTTGCAACTGTTTATGATCCTGCCAAGAGTCAGCAATTAACCAGCCGTGTGGTGACTCTGTGGTACAGGGCACCTGAGCTTTTGTTAGGTGCTACAGATTATGGAGCTGCAATAGATATGTGGAGTGCTGGTTGTATTCTAGCTGAATTGCTGCTAGGGAAGCCTATTATGCCTGGAAGAACAGAGGTGGAACAAATGCACAAGATTTTTAAGCTTTGTGGTTCCCCATCTGAAGAATATTGGCAGAGAACAAAGTTTCCCCATGCTACTAGTTTCAAACCACAACAGACTTATGAACGCCAACTTGCCAAAACATTTAGAAAGGTCTCTCCTTCAGCACTAGCCCTTGTTGATAAGCTCCTGTCTATGGAACCACAAGATCGAGGATCTGCGGCTTGCGCGCTTCAAAACGAGTTCTTCACTACAGAACCCCTACCATGTGATCCATCAAGTTTACCAAAGTTTTCACCAACCAAGGAGTTCGACGCCAGGAATCGAAACAAGGAAGTAACAACGAAAAACACTGAAGCTGCAAGAGGAAGAGGACTGGTATCTGAATTGTTGGATGCAGGACAAGATAAAAAACTACCTAGAACGCCAGAATATAACACCCAAGGAGATCTAACATTGAGGGGGAAACCAAATGTTGAGGCTCACTATAAAGTTGATCCAAGTAGATCAGTGTGCAATCCAAGTTATGTACATAGTGCAACAATGGGGAATGCAGAAGTTTCAAAACTCCAGATATTGGAGTCATCTGCTGCCAAAACTCCAGAGTTGCGGACACAAAAGTCTCAGATGAGTCGAGCCACAGCAGATTTCTCCAACTATTCAAGTAAATGGGAACAAGGAGGCATGCCTCGTCATCAAGAACCCTCGATGGGGGGCTATGTGCAAAAGAAAAGTAGGATCCACTGCTCAGGACCTTTGATCCAGGGTGGGAATATCGATGATATGCTGAGAGAACATGAGAAGCTAATGCAAGAGGCTTTCCGCACAGTCAAGATCACCAATTCTAGAAACTAA 1929 0.4355 MGCICSKQKYRIDGEHKKQKVPNKNQNGALQIEIVAPSVSTTTFPNPQSSGLHGLMVPQLAKSYAQMAMPAILEDKTNHLLLDTAQQKQQKRQQHQRCKTVGSGENGVLAERKSVLRRILSVSHISGENVDAGWPTWLSSVAGEAIKGWLPRRADSFEKLEQIGQGAYSSVHKALDLETGKFVALKKVRFLSSDPASVRFMAREIHILRQLDHPNVIKLEGLVASRTSTSLYLVFEYMEHDLAGLASTPGIKFTESQIKCFMQQLLRGLEHCHSRGVLHRDIKGSNLLIDNNGNLKIGDFGLATVYDPAKSQQLTSRVVTLWYRAPELLLGATDYGAAIDMWSAGCILAELLLGKPIMPGRTEVEQMHKIFKLCGSPSEEYWQRTKFPHATSFKPQQTYERQLAKTFRKVSPSALALVDKLLSMEPQDRGSAACALQNEFFTTEPLPCDPSSLPKFSPTKEFDARNRNKEVTTKNTEAARGRGLVSELLDAGQDKKLPRTPEYNTQGDLTLRGKPNVEAHYKVDPSRSVCNPSYVHSATMGNAEVSKLQILESSAAKTPELRTQKSQMSRATADFSNYSSKWEQGGMPRHQEPSMGGYVQKKSRIHCSGPLIQGGNIDDMLREHEKLMQEAFRTVKITNSRN 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241744g00026 642 ProSitePatterns Serine/Threonine protein kinases active-site signature. 277 289 IPR008271 GO:0004672|GO:0006468
Stsc241744g00026 642 Gene3D Phosphorylase Kinase; domain 1 144 239 - -
Stsc241744g00026 642 Pfam Protein kinase domain 157 441 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241744g00026 642 SUPERFAMILY Protein kinase-like (PK-like) 151 449 IPR011009 -
Stsc241744g00026 642 FunFam probable serine/threonine-protein kinase At1g54610 144 239 - -
Stsc241744g00026 642 ProSiteProfiles Protein kinase domain profile. 157 441 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241744g00026 642 PANTHER CELL DIVISION PROTEIN KINASE 155 447 - -
Stsc241744g00026 642 CDD STKc_CDK9_like 157 441 - -
Stsc241744g00026 642 Gene3D Transferase(Phosphotransferase) domain 1 240 480 - -
Stsc241744g00026 642 SMART serkin_6 157 441 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241744g00026 642 FunFam probable serine/threonine-protein kinase At1g54610 240 481 - -
Stsc241744g00026 642 ProSitePatterns Protein kinases ATP-binding region signature. 163 186 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241744g00026 Stsc-Chr241744 120023 122793 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241744g00026 149 531 Core Cell Cycle Gene Families AT5G10270 46.734 3.01e-115 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Stsc241744g00026 Pkinase 5.2e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241744g00026 K08819 - gmx:100817858 751.895