Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241744g00020 ATGCAGGGTAACGGAACCGATGGAGAAGCCTTGGATTTCGAGCCTGAGGACGACGACCTCATGGACGAGGACGCCGCCGCCGACGCCGACGCTGACCCCCGCGCTCCTCCTCCTAAGCTCAAGTCCGCCATCACCGCCGGTGCTTCCTCCTCCCTCTCCGCCCCTAAGAAGACCAAGGGCCGTGGCTTCCGCCAGGACTCCGATCCCAACCGCAACACCCGCCTCCAGGGCTCCGATTTCGACTCCCTCGCCACCGAGGGCGGTCCTGGCCCTCAAAGATCCATTGAAGGATGGATTATTCTGGTGACGGGCGTACACGAGGAAGCACAGGAGGATGATTTGCAAAACGCTTTTGGCGAATACGGAGAGATTAAGAACTTGCATTTGAATCTCGACCGTCGCACTGGTTTTGTCAAAGGTTATGCCCTGATTGAATATGAGCGTGCTGAGGAAGCTCGTAATGCAATAGAGAATTTGAATGGATCCGAGCTTCTTACACAAACCATTTACGTAGACTGGGCATTCAGCAGTGGACCTATTAACGAGTCAGCAAGAAGAAAGAATGTTAGACCAACTCGTGAGCGACGCTCCAGGAGCCCTCGCAGGAGATATTAA 615 0.5496 MQGNGTDGEALDFEPEDDDLMDEDAAADADADPRAPPPKLKSAITAGASSSLSAPKKTKGRGFRQDSDPNRNTRLQGSDFDSLATEGGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEARNAIENLNGSELLTQTIYVDWAFSSGPINESARRKNVRPTRERRSRSPRRRY 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241744g00020 204 SUPERFAMILY RNA-binding domain, RBD 91 201 IPR035979 GO:0003676
Stsc241744g00020 204 SMART rrm1_1 99 172 IPR000504 GO:0003723
Stsc241744g00020 204 MobiDBLite consensus disorder prediction 190 204 - -
Stsc241744g00020 204 FunFam RNA-binding protein 8A-like 30 195 - -
Stsc241744g00020 204 Gene3D - 16 189 IPR012677 -
Stsc241744g00020 204 MobiDBLite consensus disorder prediction 182 204 - -
Stsc241744g00020 204 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 100 169 IPR000504 GO:0003723
Stsc241744g00020 204 CDD RRM_RBM8 92 179 IPR033744 GO:0003729
Stsc241744g00020 204 MobiDBLite consensus disorder prediction 10 26 - -
Stsc241744g00020 204 PRINTS RNA binding motif protein 8 family signature 52 64 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Stsc241744g00020 204 PRINTS RNA binding motif protein 8 family signature 163 175 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Stsc241744g00020 204 PRINTS RNA binding motif protein 8 family signature 89 103 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Stsc241744g00020 204 PRINTS RNA binding motif protein 8 family signature 145 161 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Stsc241744g00020 204 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 98 176 IPR000504 GO:0003723
Stsc241744g00020 204 PANTHER RNA-BINDING PROTEIN 8A 7 203 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Stsc241744g00020 204 MobiDBLite consensus disorder prediction 1 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241744g00020 Stsc-Chr241744 89247 90995 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241744g00020 100 174 Eukaryotic Initiation Factors Gene Family AT3G11400 29.333 1.08e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241744g00020 K12876 - gmx:100527187 293.123