Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241744g00013 ATGGGATCCATGTTTCAAGAAGAAGGGTCATCTTCTGTAACTTCATCACCCCTTCAATTCTTCTCAATGATGTCACTGTCACCTAGCATAGGATCTCCATACACATGGCTGAGAGAGCTGAAATCAGAGGAAAGAGGCTTGGCCTTGATCCATTTGTTGCTCACTTGTGCAAACCATGTGGCTGCTGGCAGTCTTGAGAATGCAAATGTAATGCTTGATCAAATTTCCCAGTTAGCTTCCCCGGACGGCGACACTATGCAGCGAATCGCCGCATACTTCAACGAAGCGCTCGCCGATAGGATACTCAAGACATGGCCTGGCCTCCACAGGGCCCTCAATTCCACCAGGATTGTCATGCTTTCCGAAGAAATTCTTGTCCAGAAGCTCTTCCTTGAGCTTTTTCCGTTCTTGAAGGTGTCATATATACTCACAAATCAGGCTATTGTTGAAGCAATGGAAGGGGAGAAAATGGTGCACATAATTGATCTCAATGCTGCTGAACCTGCTCAATGGATTGCTCTCCTCCAAGTTTTTAGTGCACGCCCTGAAGGCCCTCCTCATTTGAGAATTACTGGGGTTCATCACCAGAAAGAGATTCTAGAGCAGATGGCTCACAAGCTTACTGAGGAAGCAGAAAAGTTGGATATCCCCTTCCAATTTCATCCTGTAGTTAGCAGATTAGAGAATCTTGATTTTGATAAGCTAAGAGTGAAAACCGGAGAAGCACTTGCAATAAGTTCTATTCTGCAATTGCATTCCCTTTTAGGCTTGGATGATGAGGCCTTGCGGAGAAGATCTCCTCTTTTGTCGAAAAACTCGAATGGAATTCACCTGCAGAAGGCCCTGCTGATGAATCAAAGTACCTTAGGCGATTTGCTTGAGAAAGATACTGTGAATGGCTACAGTCCAAGTCCTGACTCGGCCTCATCCTCGCCAGTTTCTTTAACAGCTTCGATGACTGCAGAGAGCTTTCTCAATGCCCTGTGGGGATTATCACCAAAGGTGATGATTGTGACAGAACAAGACTCTAATCATAATGGCTCAACCTTGATGGAGAGAGTACTAGAAGCTCTCTATTCTTATGCAGCATTGTTTGATTGTTTGGAATCCACCGTCTCTAGGACATCGGTCGAGAGATTAAAGGTGGAGAAGATGCTTTTTGGTGAAGAAATCAAGAATATCATTGCTTGTGAGGGAGCTGAAAGAAGGGAAAGACATGAAAAGCTAGACAAGTGGATTCAGAGACTGGATTTGTCTGGGTTTGGCAATGTGCCGTTGAGCTATTACGGCATGTTGCAGGCTCGGAGGTTCCTGCAGAGCTGTGGTTGTGAGGGATACAAGATGAGGGAGGAGAATGGCTGTGTTGTAATTTGCTGGCAGGATAGACCATTGTTTTCAATATCTGCTTGGAGATCTAGGAAGTGA 1425 0.4519 MGSMFQEEGSSSVTSSPLQFFSMMSLSPSIGSPYTWLRELKSEERGLALIHLLLTCANHVAAGSLENANVMLDQISQLASPDGDTMQRIAAYFNEALADRILKTWPGLHRALNSTRIVMLSEEILVQKLFLELFPFLKVSYILTNQAIVEAMEGEKMVHIIDLNAAEPAQWIALLQVFSARPEGPPHLRITGVHHQKEILEQMAHKLTEEAEKLDIPFQFHPVVSRLENLDFDKLRVKTGEALAISSILQLHSLLGLDDEALRRRSPLLSKNSNGIHLQKALLMNQSTLGDLLEKDTVNGYSPSPDSASSSPVSLTASMTAESFLNALWGLSPKVMIVTEQDSNHNGSTLMERVLEALYSYAALFDCLESTVSRTSVERLKVEKMLFGEEIKNIIACEGAERRERHEKLDKWIQRLDLSGFGNVPLSYYGMLQARRFLQSCGCEGYKMREENGCVVICWQDRPLFSISAWRSRK 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241744g00013 474 ProSiteProfiles GRAS family profile. 40 471 IPR005202 -
Stsc241744g00013 474 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 45 466 IPR005202 -
Stsc241744g00013 474 Pfam GRAS domain family 49 471 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241744g00013 Stsc-Chr241744 54518 56909 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241744g00013 1 474 GRAS Transcription Factor Family AT1G50420 69.215 0.0 685
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Stsc241744g00013 GRAS 6.7e-140 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241744g00013 - - cave:132164091 789.645