Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241744g00005 ATGTCTAACTTGCTAATAACTTTGTTGTTAATTTCCATTATTGAAATCTTGTTGCTTCCTAACGAAACAAGAAGCAAAACCACATCTCCATCAGCTTGTGGAAGCAGATACTGTGGAAGCTCTGAAGTTGCCATTGAATTCCCTTTCCATTTCATGACACAAAATCATACTAGCTTTGTTGAAGGAGATGAACGATGCGGGTACCAAGGTTTTGAGGTTTCTTGTAAGCAAAGTAAATTGATGATTAGTCTCCCAAATGGAGGAGGAGAATTCACTGTCAAAAACATCTCTCTAGAGCACCAATATATTTGGATTAACGACCCTAATGATTGTCTTGCTAAACGGTTGTTCTTGCAAGGAAATGACCTCATCAAAGATTCACCCTTCCTATGGGGCCTTCCAAATTCAAAGAAAGTGGTGTTATACAATTGCAGCGAAGTAGCAGGAATTGATGTTGATCCGCAACTTCGTATTCCTTGCCTAAGTGACAATGAGAAGCATCATTATTCTGTTATAGTTTTATCTGAGTCAGATGGTGACAACGAGAATTATAGTTCAAAGTGTAGGACTATTGGGTCTGCTTTGTTTCCGGTTAAGGATGCTTCTGGAGATGATGAAGATTCTTCATCATCACGGAGAATAAGAGATGAACTTGTTCATTTTGATATGAAGCTGCAATGGTTTAGGCCTACTTGTTACTGTAAGGAGGATCAACACTGTGGCTTCATACCAAATGCTGATTTTGACGTTGTTTGTTACAGCCACAATAATCAAGAACAAGATATGTTTCTTCAAGTTGAACTTGATAGCAATGATGGTGGAAATCCTGCGCCTCCAACTCCAAGTAATTATGGCGAATACCCAAAGAACAAGTTTCCTATAACACTGGGAGTACTAGCTATATTACTATTTGTAATTTATATAACATTGGTTATAACTAAGGAGATCAGAAATGAAAGGCTACGGCAGAGAAGGTTGAGGATCCAACAGGCACGAGAAAGGAGGATTTTATTGAACGAATTGAGACAGCTACGAGTGCTAGAGCTAAGCAGATTAAGAACAATGGAATCATTATCAATGAGTGACAGATACCCTGCTGTCACCAGCGATGAGAATTCAACAAGAATGATAGAGTTACAAGAATGTCCAGTGATCCAGCTTGGTGAGAGTGGACAATTGCCAACAATGTCAATGGACAATGTTTGTTCTATATGTCTTAGTGAGTATGAGGCTAAAGAAACATTAAGGAGCATGCCACAGTGCAATCACTTTTTTCATTCTCATTGTATTGATGCCTGGCTCAAGATGAATGCTACTTGTCCTTTGTGCCGAAAGATGCCTTGGGATTCAAGCTAG 1356 0.3909 MSNLLITLLLISIIEILLLPNETRSKTTSPSACGSRYCGSSEVAIEFPFHFMTQNHTSFVEGDERCGYQGFEVSCKQSKLMISLPNGGGEFTVKNISLEHQYIWINDPNDCLAKRLFLQGNDLIKDSPFLWGLPNSKKVVLYNCSEVAGIDVDPQLRIPCLSDNEKHHYSVIVLSESDGDNENYSSKCRTIGSALFPVKDASGDDEDSSSSRRIRDELVHFDMKLQWFRPTCYCKEDQHCGFIPNADFDVVCYSHNNQEQDMFLQVELDSNDGGNPAPPTPSNYGEYPKNKFPITLGVLAILLFVIYITLVITKEIRNERLRQRRLRIQQARERRILLNELRQLRVLELSRLRTMESLSMSDRYPAVTSDENSTRMIELQECPVIQLGESGQLPTMSMDNVCSICLSEYEAKETLRSMPQCNHFFHSHCIDAWLKMNATCPLCRKMPWDSS 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241744g00005 451 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 358 448 IPR013083 -
Stsc241744g00005 451 SUPERFAMILY RING/U-box 401 446 - -
Stsc241744g00005 451 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 10 447 IPR046948 -
Stsc241744g00005 451 SMART ring_2 402 443 IPR001841 -
Stsc241744g00005 451 CDD RING-H2_EL5-like 402 444 - -
Stsc241744g00005 451 ProSiteProfiles Zinc finger RING-type profile. 402 444 IPR001841 -
Stsc241744g00005 451 Pfam Wall-associated receptor kinase galacturonan-binding 33 107 IPR025287 GO:0030247
Stsc241744g00005 451 Pfam Ring finger domain 401 444 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241744g00005 Stsc-Chr241744 14898 16559 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241744g00005 33 447 C3H Transcription Factor Family AT2G25410 29.384 2.09e-33 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241744g00005 - - ahf:112801412 639.802