Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241744g00004 ATGATGCCTAATACTCTGCAATATTATTTTTCCCTCACATTTGTTGTCTTGATTATTATCATTGGGAACAAAAGAAGAGAGGCTGAGGCAAGTGACGATAATAACTGTAACACCACCTCATGTGGAAACAACATACTTGCTATTGATTTCCCGTTTTGGATAAAAAGCAATAACGGCAACAACGATCATCGATGTGGGTACCAAGGTTTCGATATCAAATGCAACAAGCAGAACCAACCGTTGCTAAATCTCCCTGAATCCGGCGACTTCGTGGTAAAAGGAATCGAGTATGAAGAGCAACAAGTTATGATCAACGACCCAGAAGAGTGTCTGCCAAGAAAAATCATGCTCAACCGTGGATTCAGCCTCGCAGATTCCCCTTTCCAATTAGCCAACGGTTTCATCTACCGGAATTACTCGTTTTACAACTGTCCGTACGAGCCAGAATCGCTTGTGATGATAAGGTGCTTGGGATCGTCAACGAGCAACAACGTTAGCTATTCTGTGGTGGCGGTGTTGTCTTCGGTACCTCCTCAAAGGTTGTTGAATTTGTCGGCGTGTCACTTTATTACATTGGGTTTGGCACCTGTTCCTAGTTATGTAGGGTATGAAGAATATTGGATGAGTTACTATGTTGATATACAGTTGCAGTGGAATGAACCTGATTGCAGCGATTGTTTACAACGTGGTGGACGATGTGGCCTTGTTCCCGATTCTACCATTGATCATGCTGCTTGTTATGATCTTCCACACCAAGGTCTTTCGAAGAAAGCCAAGTTGGGCCTAACTATGGGCGTGGGAATACCTGGACTCATTGGCATCATTGGACTCATATGTTTGTTGCAACATAGAAAGATGAGACGAGAAGAGCGACAGCAGTCATCCAGAACCAGAACAGAAACAGAGATTTCTATCATGAATGTTCGTCACCCTCCAGCGGTCCAATTGGGCCTTAATGGGCCATCCATAGAAAGGTACCCAAAAACTGAGGTTGGTGAGAGTGGGCAATTGCCTAGGCCCAATGATACCATTTGCTCAATATGTCTATGTGAATATCGGCCCAAAGAGGTGATAAGAACCATAACAGAGTGTGAGCACTATTTCCATGTTGATTGCATTGATGGGTGGCTGAAGATGAATGCTACTTGCCCTTTGTGTAGAAAATTACCAGCAACATCCAATTCCAGTTCCTCCTCCTCTTTGCCTTTCTCTCCGTCTTCCTCCTAA 1227 0.4393 MMPNTLQYYFSLTFVVLIIIIGNKRREAEASDDNNCNTTSCGNNILAIDFPFWIKSNNGNNDHRCGYQGFDIKCNKQNQPLLNLPESGDFVVKGIEYEEQQVMINDPEECLPRKIMLNRGFSLADSPFQLANGFIYRNYSFYNCPYEPESLVMIRCLGSSTSNNVSYSVVAVLSSVPPQRLLNLSACHFITLGLAPVPSYVGYEEYWMSYYVDIQLQWNEPDCSDCLQRGGRCGLVPDSTIDHAACYDLPHQGLSKKAKLGLTMGVGIPGLIGIIGLICLLQHRKMRREERQQSSRTRTETEISIMNVRHPPAVQLGLNGPSIERYPKTEVGESGQLPRPNDTICSICLCEYRPKEVIRTITECEHYFHVDCIDGWLKMNATCPLCRKLPATSNSSSSSSLPFSPSSS 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241744g00004 408 ProSiteProfiles Zinc finger RING-type profile. 345 387 IPR001841 -
Stsc241744g00004 408 SMART ring_2 345 386 IPR001841 -
Stsc241744g00004 408 Pfam Ring finger domain 344 387 IPR001841 -
Stsc241744g00004 408 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 307 392 IPR013083 -
Stsc241744g00004 408 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 11 389 IPR046948 -
Stsc241744g00004 408 SUPERFAMILY RING/U-box 339 389 - -
Stsc241744g00004 408 Pfam Wall-associated receptor kinase galacturonan-binding 36 106 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241744g00004 Stsc-Chr241744 12653 14466 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241744g00004 30 391 C3H Transcription Factor Family AT2G25410 34.133 2.26e-58 193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241744g00004 - - adu:107488400 540.806