Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241744g00003 ATGATCAACGACCCAGAAGAGTGTCTGCCAAGAAAAATCATGCTCAACCGTGGATTCAGCCTCGCAGATTCCCCTTTCCAATTAGCCAACGGTTTCATGTACCAGAATTACTCGTTTTACAACTGTCCGTACGAGCCGGAATCACCGGTGATGATAAGGTGCTTGGGATCGTCGACAAGCAACAACGTTAGCTATTCTGTGGTGGCGGTGTTGTCGTCGGAACCACCTCAGAGGTTGTTGAATTTGTCGGCGTGCCACTTTATTACATGGGGTTTGGCACCTGTTCCGAGTTATATACATGAAGATTATTGGACGATTAGCGATGTTGGTGTACAGTTGCAGTGGAATGAACCTGATTGCAGATATTGTTTACAACATGGTGGACGCTGTGGTCTGCTACAAGATTCTACCAATGATCATGCTGCTTGTTATGATCTTCCACACCAAGATCAAGGTCTTTCGAGGAAAGCCAGGTTGGGCCTAACCATGGGCCTGGGAATACCTGGATTCATTGCAATCATTGGACTCATATGTTTGTTGCAACACAGAAAAATGAGACGAGAACAGAGACAGCAATCATCAGGGACAGAAACAGAATTTTCTATCATGAATGCTGGTCACACTCAAGCGGCCTTAATGGGCCTTGACGGTCCGTCTATAGAAAAATATCCAAAAACTGAGATTGGTGAGAATGGGCAATTGCCTAGGCCCAATGATACCACTTGCTCAATATGTCTATGTGAGTATCGGCCCAAAGAGGTTATAAGAACCATAACAGAGTGTGAACACTATTTCCATGTTGGTTGCATTGATGGGTGGCTGAAGATGAATGCTACTTGCCCTTTGTGTAGAAAATTACCGGCAAGATCCTATTCCAATTCCTCCTCTTCTTTGCCTTTCTCTCCATCTTCCTCCTAA 918 0.4488 MINDPEECLPRKIMLNRGFSLADSPFQLANGFMYQNYSFYNCPYEPESPVMIRCLGSSTSNNVSYSVVAVLSSEPPQRLLNLSACHFITWGLAPVPSYIHEDYWTISDVGVQLQWNEPDCRYCLQHGGRCGLLQDSTNDHAACYDLPHQDQGLSRKARLGLTMGLGIPGFIAIIGLICLLQHRKMRREQRQQSSGTETEFSIMNAGHTQAALMGLDGPSIEKYPKTEIGENGQLPRPNDTTCSICLCEYRPKEVIRTITECEHYFHVGCIDGWLKMNATCPLCRKLPARSYSNSSSSLPFSPSSS 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241744g00003 305 SMART ring_2 242 283 IPR001841 -
Stsc241744g00003 305 ProSiteProfiles Zinc finger RING-type profile. 242 284 IPR001841 -
Stsc241744g00003 305 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 2 286 IPR046948 -
Stsc241744g00003 305 Pfam Ring finger domain 241 284 IPR001841 -
Stsc241744g00003 305 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 203 288 IPR013083 -
Stsc241744g00003 305 SUPERFAMILY RING/U-box 235 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241744g00003 Stsc-Chr241744 10387 11960 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241744g00003 2 288 C3H Transcription Factor Family AT2G25410 33.223 5.14e-40 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241744g00003 - - adu:107488400 451.055