Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241743g00028 ATGGACTTGATGGAGTTGTCACTAGGGAGTGGGAGTGGGAGTGGAAGTGGGAGCAGCAAAGACGATCGGAATTGGCAACAAGGAGGAGGAGGAGGAGTGGTTGGTTCTTGCTCAACGTCATCGTCGGAGGCGGTGGAGAAAGAGCACATGTTTGACAAAGTGGTGACTCCAAGCGACGTAGGGAAGCTGAACAGGCTAGTGATACCGAAGCAGCACGCGGAAAAGTACTTTCCATTGGACTCATCCTCCAACGACAAGGGCCTTCTCCTCAATTTCGAGGACAGAAACGGCAAGCTTTGGCGATTCAGGTACTCTTACTGGAACAGTAGCCAAAGTTATGTGATGACCAAGGGCTGGAGCCGTTTCGTTAAGGAGAAGAAGCTGGATGCCGGCGACATTGTGTCCTTCCACCGCGGCATCGGCGAACTGTATAGGCACAGGTTGTACATTGACTGGAGGCGCAGGCCTGACCATCCCCCTCCTGACCCTTCCGCATCTCTCATCTCCCCTTTCTTCTTTCCTAATCATCACTACTCCGCCATCACATGGGGCGGCCCCGGCAGGTTCTACTCTCTGCCTTCTCCCACGCATCCTCCTCCTCCTCGCCACCATCACTTTCATCATCAGCAGCAGCACCACCACCTCGCTACTACTTACAACAACCAGATGTACGGCTTTCATCATCATCCTGGTTCCGCAACTGGAACAAGTCATCATCATCATCTCAGCAGCTATAATGAGCATCATCAGCAGCAGCTGAATTCCGGATCTGCCGGACAGCTTTATTACCTTCGGTCAACCCCGTCAATGTCAATTTTTGACCCCAACTTGCATCAAGAGAGAGGGCCTGCTATTGCTCCCATGATCATTGATTCCGTGCCGGTTGCTCATCATCATCATCAACAACAACAACAGCAACATCAACACCAACACGGTGTGGTGTCTAATAGTAGTAACTATGAGAGTACTAGTAGTAGTAGTGCAGGAAAACGACTAAGGCTATTTGGTGTCAACATGGAATGTGCTTCTTCTTCTTCTTCCGCAGCTGAAGATCACTCACAGGTGGCAATGCCTGATTCATCCCCATCGACAACCAGGTTTGGGGATCAGAGAGGGGATACTACTACTACAACTACTTCTGTGCTTTTTGATTTAGATCCCTCTTTGCAATACCACCACCGGCACTGA 1188 0.5051 MDLMELSLGSGSGSGSGSSKDDRNWQQGGGGGVVGSCSTSSSEAVEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNDKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFHRGIGELYRHRLYIDWRRRPDHPPPDPSASLISPFFFPNHHYSAITWGGPGRFYSLPSPTHPPPPRHHHFHHQQQHHHLATTYNNQMYGFHHHPGSATGTSHHHHLSSYNEHHQQQLNSGSAGQLYYLRSTPSMSIFDPNLHQERGPAIAPMIIDSVPVAHHHHQQQQQQHQHQHGVVSNSSNYESTSSSSAGKRLRLFGVNMECASSSSSAAEDHSQVAMPDSSPSTTRFGDQRGDTTTTTTSVLFDLDPSLQYHHRH 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241743g00028 395 MobiDBLite consensus disorder prediction 297 327 - -
Stsc241743g00028 395 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 39 350 IPR044800 GO:0003700
Stsc241743g00028 395 FunFam B3 domain-containing protein 44 164 - -
Stsc241743g00028 395 SUPERFAMILY DNA-binding pseudobarrel domain 48 156 IPR015300 -
Stsc241743g00028 395 MobiDBLite consensus disorder prediction 1 39 - -
Stsc241743g00028 395 SMART B3_2 51 156 IPR003340 GO:0003677
Stsc241743g00028 395 CDD B3_DNA 49 138 IPR003340 GO:0003677
Stsc241743g00028 395 ProSiteProfiles B3 DNA-binding domain profile. 51 156 IPR003340 GO:0003677
Stsc241743g00028 395 MobiDBLite consensus disorder prediction 9 39 - -
Stsc241743g00028 395 MobiDBLite consensus disorder prediction 296 327 - -
Stsc241743g00028 395 Pfam B3 DNA binding domain 51 155 IPR003340 GO:0003677
Stsc241743g00028 395 MobiDBLite consensus disorder prediction 345 378 - -
Stsc241743g00028 395 Gene3D - 44 159 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241743g00028 Stsc-Chr241743 114292 116977 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241743g00028 41 344 RAV Transcription Factor Family AT2G46870 46.926 6.88e-77 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc241743g00028 B3 3.1e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241743g00028 K09287 - gmx:100778733 344.739