Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241743g00027 ATGGAGGAAGAAGTCAAAGGATATTCCGACAGCAGAGAAGAGGGGGAGGAAGAGGAAGAAGACGACGCAGCGGAAATCATCCCAATCCCAAACACAAGACAAGAAACCAACAATACCGCTAACAGGTTACAGCAGCAAGATGCAGCAGCAGCAGCTCCCAATTTCAGCCACCGGAAGCAGATGGACTTGATGGAGTTGTCACTAGGGAGTGGGAGTGGGAGTGGAAGTGGGAGCAGCAAAGACGATCGGAATTGGCAACAAGGAGGAGGAGGAGGAGTGGTTGGTTCTTGCTCAACGTCATCGTCGGAGGCGGTGGAGAAAGAGCACATGTTTGACAAAGTGGTGACTCCAAGCGACGTAGGGAAGCTGAACAGGCTAGTGATACCGAAGCAGCACGCGGAAAAGTACTTTCCATTGGACTCATCCTCCAACGACAAGGGCCTTCTCCTCAATTTCGAGGACAGAAACGGCAAGCTTTGGCGATTCAGGTACTCTTACTGGAACAGTAGCCAAAGTTATGTGATGACCAAGGGCTGGAGCCGTTTCGTTAAGGAGAAGAAGCTGGATGCCGGCGACATTGTGTCCTTCCACCGCGGCATCGGCGAACTGTATAGGCACAGGTTGTACATTGACTGGAGGCGCAGGCCTGACCATCCCCCTCCTGACCCTTCCGCATCTCTCATCTCCCCTTTCTTCTTTCCTAATCATCACTACTCCGCCATCACATGGGGCGGCCCCGGCAGGTTCTACTCTCTGCCTTCTCCCACGCATCCTCCTCCTCCTCGCCACCATCACTTTCATCATCAGCAGCAGCACCACCACCTCGCTACTACTTACAACAACCAGATGTACGGCTTTCATCATCATCCTGGTTCCGCAACTGGAACAAGTCATCATCATCATCTCAGCAGCTATAATGAGCATCATCAGCAGCAGCTGAATTCCGGATCTGCCGGACAGCTTTATTACCTTCGGTCAACCCCGTCAATGTCAATTTTTGACCCCAACTTGCATCAAGAGAGAGGGCCTGCTATTGCTCCCATGATCATTGATTCCGTGCCGGTTGCTCATCATCATCATCAACAACAACAACAGCAACATCAACACCAACACGGTGTGGTGTCTAATAGTAGTAACTATGAGAGTACTAGTAGTAGTAGTGCAGGAAAACGACTAAGGCTATTTGGTGTCAACATGGAATGTGCTTCTTCTTCTTCTTCCGCAGCTGAAGATCACTCACAGGTGGCAATGCCTGATTCATCCCCATCGACAACCAGGTTTGGGGATCAGAGAGGGGATACTACTACTACAACTACTTCTGTGCTTTTTGATTTAGATCCCTCTTTGCAATACCACCACCGGCACTGA 1368 0.5051 MEEEVKGYSDSREEGEEEEEDDAAEIIPIPNTRQETNNTANRLQQQDAAAAAPNFSHRKQMDLMELSLGSGSGSGSGSSKDDRNWQQGGGGGVVGSCSTSSSEAVEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNDKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFHRGIGELYRHRLYIDWRRRPDHPPPDPSASLISPFFFPNHHYSAITWGGPGRFYSLPSPTHPPPPRHHHFHHQQQHHHLATTYNNQMYGFHHHPGSATGTSHHHHLSSYNEHHQQQLNSGSAGQLYYLRSTPSMSIFDPNLHQERGPAIAPMIIDSVPVAHHHHQQQQQQHQHQHGVVSNSSNYESTSSSSAGKRLRLFGVNMECASSSSSAAEDHSQVAMPDSSPSTTRFGDQRGDTTTTTTSVLFDLDPSLQYHHRH 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241743g00027 455 MobiDBLite consensus disorder prediction 1 101 - -
Stsc241743g00027 455 SMART B3_2 111 216 IPR003340 GO:0003677
Stsc241743g00027 455 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 38 410 IPR044800 GO:0003700
Stsc241743g00027 455 MobiDBLite consensus disorder prediction 357 387 - -
Stsc241743g00027 455 Gene3D - 104 219 IPR015300 -
Stsc241743g00027 455 MobiDBLite consensus disorder prediction 30 51 - -
Stsc241743g00027 455 MobiDBLite consensus disorder prediction 67 101 - -
Stsc241743g00027 455 CDD B3_DNA 109 198 IPR003340 GO:0003677
Stsc241743g00027 455 MobiDBLite consensus disorder prediction 356 387 - -
Stsc241743g00027 455 FunFam B3 domain-containing protein 104 224 - -
Stsc241743g00027 455 Pfam B3 DNA binding domain 111 215 IPR003340 GO:0003677
Stsc241743g00027 455 ProSiteProfiles B3 DNA-binding domain profile. 111 216 IPR003340 GO:0003677
Stsc241743g00027 455 SUPERFAMILY DNA-binding pseudobarrel domain 108 216 IPR015300 -
Stsc241743g00027 455 MobiDBLite consensus disorder prediction 405 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241743g00027 Stsc-Chr241743 114285 116977 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241743g00027 101 404 RAV Transcription Factor Family AT2G46870 46.926 1.09e-76 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc241743g00027 B3 4.1e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241743g00027 K09287 - gmx:100778733 360.533