Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241743g00026 ATGGCTTCTGCTTGTGCTTCCTCTGCCATTGCACCTCTTGCTATCTCTACTCCAAGTTCAAACATAAAAACTTATTCATTCCTAAGTGGGAGCAAGTTGAAGAAGATTGGTAAGAAGCATGCAGCAGGGATTAGAGGAGGATCCAGCACAAGAGTATATGCAGCAGCGGCTGACCCTGATAGACCCCTGTGGTTCCCTGGAAGCACCCCTCCTCCATGGCTTGATGGCAGCCTCCCCGGAGACTTTGGGTTTGATCCTCTTGGTCTGGGATCTGATCCAGAGAGCCTGAGATGGAATGTGCAGGCAGAGCTGGTGCACTGCAGGTGGGCAATGCTTGGTGCTGCCGGCATCTTCATTCCAGAATTCTTAACAAAGATTGGCGTGCTCAACACGCCATCCTGGTATACAGCTGGAGAACAGGAGTACTTCACGGACACAACCACTCTCTTCATAATTGAGCTCATCTTCATTGGATGGGCGGAGGGAAGGAGGTGGGCGGACATCATCAAGCCAGGGTGTGTCAACACCGACCCCATATTCCCAAACAACAAGCTCACTGGCACCGATGTTGGTTACCCTGGTGGCCTCTGGTTTGACCCTCTCGGATGGGGCTCTGGCTCTCCTGAAAAGATCAAGGAATTGAGAACTAAGGAGATCAAGAATGGAAGGCTCGCCATGTTGGCTGTCATGGGAGCTTGGTTCCAGCACATCTACACCGGTACTGGTCCCATTGACAACCTCTTTGCTCACCTTGCTGATCCCGGCCATGCTACCGTTTTTGCTGCTTTCACGCCCAAGTGA 801 0.5194 MASACASSAIAPLAISTPSSNIKTYSFLSGSKLKKIGKKHAAGIRGGSSTRVYAAAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGEQEYFTDTTTLFIIELIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFAAFTPK 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241743g00026 266 Pfam Chlorophyll A-B binding protein 70 236 IPR022796 -
Stsc241743g00026 266 SUPERFAMILY Chlorophyll a-b binding protein 55 264 - -
Stsc241743g00026 266 Gene3D Chlorophyll a/b binding protein domain 71 256 - -
Stsc241743g00026 266 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 23 264 IPR001344 GO:0009765|GO:0016020
Stsc241743g00026 266 FunFam Chlorophyll a-b binding protein, chloroplastic 71 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241743g00026 Stsc-Chr241743 102921 104939 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241743g00026 52 266 Chloroplast and Mitochondria Gene Families AT3G61470 91.628 2.95e-150 418
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241743g00026 K08908 - csav:115712845 468.774