Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241743g00021 ATGCAGTCAGCCCTTACCGGAGAATCTCTACCTGTAACAAAGAGAACAGGTGATGAGGTATTTTCAGGTTCAACATGTAAGCAGGGAGAGATTGAAGCTGTGGTGATAGCAACAGGAGTTAATTCCTTTTTCGGAAAGGCAGCGCATTTGGTTGATAGCACAGAAGTTGTTGGGCACTTTCAGAAGGTCCTTACTTCAATTGGTAACTTCTGCATTTGCTCTATAGCTATAGGGATGCTCCTTGAAATAATCATAATGTTCCCAGTGGAGCATCGTTCATACAGGGATGGAATTAACAACCTTCTTGTTCTCCTGATTGGAGGAATTCCCATTGCCATGCCTACAGTACTGTCTGTGACACTTGCAATTGGCTCTCATCGTCTTTCTCAGCAGGGAGCCATCACAAAGAGAATGACAGCTATCGAAGAAATGGCCGGAATGGATGTCCTATGCAGTGATAAAACTGGAACTCTTACACTAAACCGCTTATCCGTCGATCGAAATCTTGTAGAGGTCTTTAACAGAAACATGGACAGAGATATGGTTATTCTATTAGCAGCCAGGGCATCTAGATTGGAAAACCAAGATGCCATTGACAGTGCCATTATTAACATGCTAGCTGATCCAAAGGAGGCACGTGCAAACATTACCGAGCTTCATTTTCTACCTTTCAATCCAGTAGATAAACGCACAGCAATCACATATATTGATTCAGATGGTAACTTTTACAGGGCCAGCAAAGGAGCACCTGAACAGATTCTAAGTTTGTGCCAAGAGAAAGACGAGATTGCTAGAAGAGTGCATGCAATCATTGACAAATTTGCTGAGAGGGGACTTCGATCTCTTGCAGTGGCTTATCAGGAAATTCCTGAAAAATCCAAGGATGGTCCTGGAGGTCCATGGACATTTTGTGGTTTGTTGCCTCTTTTTGATCCTCCAAGACATGATAGTGCTGAGACCATCAGAAGAGCACTTAACCTTGGAGTCTGTGTTAAGATGATCACAGGGGATCAGCTGGCAATTGCAAAGGAGACTGGCCGAAGACTTGGTATGGGGACAAACATGTATCCTTCTTCATCTTTATTGGGACGTGAAAAAGATGAAAATGAAGCACTCCCGGTCGACGAGCTCATCGAAAAGGCAGATGGCTTTGCTGGTGTATTTCCTGAACATAAGTATGAAATAGTGAAAATTTTGCAAGAAAAGAAGCATGTAGTTGGGATGACAGGAGATGGAGTGAATGATGCACCAGCACTGAAGAAAGCAGATATTGGAATAGCCGTGTCAGATGCTACAGATGCTGCAAGAGGCGCCGCCGATCTCGTCTTAACTGAGCCTGGATTAAGTGTGATCATCAGTGCAGTCTTAACTAGCCGAGCTATATTTCAAAGAATGAAAAACTATACAGTTGAGTTGAAAGCATGA 1425 0.433 MQSALTGESLPVTKRTGDEVFSGSTCKQGEIEAVVIATGVNSFFGKAAHLVDSTEVVGHFQKVLTSIGNFCICSIAIGMLLEIIIMFPVEHRSYRDGINNLLVLLIGGIPIAMPTVLSVTLAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNRLSVDRNLVEVFNRNMDRDMVILLAARASRLENQDAIDSAIINMLADPKEARANITELHFLPFNPVDKRTAITYIDSDGNFYRASKGAPEQILSLCQEKDEIARRVHAIIDKFAERGLRSLAVAYQEIPEKSKDGPGGPWTFCGLLPLFDPPRHDSAETIRRALNLGVCVKMITGDQLAIAKETGRRLGMGTNMYPSSSLLGREKDENEALPVDELIEKADGFAGVFPEHKYEIVKILQEKKHVVGMTGDGVNDAPALKKADIGIAVSDATDAARGAADLVLTEPGLSVIISAVLTSRAIFQRMKNYTVELKA 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241743g00021 474 Pfam E1-E2 ATPase 2 130 - -
Stsc241743g00021 474 SFLD C1.7: P-type atpase like 133 461 - -
Stsc241743g00021 474 FunFam Plasma membrane ATPase 163 310 - -
Stsc241743g00021 474 SUPERFAMILY Calcium ATPase, transduction domain A 2 51 IPR008250 -
Stsc241743g00021 474 Gene3D - 163 306 IPR023299 GO:0000166
Stsc241743g00021 474 Gene3D - 19 155 - -
Stsc241743g00021 474 ProSitePatterns E1-E2 ATPases phosphorylation site. 153 159 IPR018303 -
Stsc241743g00021 474 Gene3D - 307 446 IPR023214 -
Stsc241743g00021 474 FunFam Plasma membrane ATPase 303 457 - -
Stsc241743g00021 474 PRINTS H+-transporting ATPase (proton pump) signature 267 285 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc241743g00021 474 PRINTS H+-transporting ATPase (proton pump) signature 381 397 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc241743g00021 474 PRINTS H+-transporting ATPase (proton pump) signature 409 425 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc241743g00021 474 PRINTS H+-transporting ATPase (proton pump) signature 440 465 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc241743g00021 474 PRINTS P-type cation-transporting ATPase superfamily signature 327 337 - -
Stsc241743g00021 474 PRINTS P-type cation-transporting ATPase superfamily signature 432 444 - -
Stsc241743g00021 474 PRINTS P-type cation-transporting ATPase superfamily signature 409 428 - -
Stsc241743g00021 474 PRINTS P-type cation-transporting ATPase superfamily signature 305 316 - -
Stsc241743g00021 474 PRINTS P-type cation-transporting ATPase superfamily signature 151 165 - -
Stsc241743g00021 474 PRINTS P-type cation-transporting ATPase superfamily signature 1 14 - -
Stsc241743g00021 474 Pfam haloacid dehalogenase-like hydrolase 147 423 - -
Stsc241743g00021 474 NCBIfam HAD-IC family P-type ATPase 2 168 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc241743g00021 474 NCBIfam HAD-IC family P-type ATPase 384 469 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc241743g00021 474 SUPERFAMILY Calcium ATPase, transmembrane domain M 51 469 IPR023298 -
Stsc241743g00021 474 PANTHER CALCIUM-TRANSPORTING ATPASE 2 470 - -
Stsc241743g00021 474 NCBIfam plasma-membrane proton-efflux P-type ATPase 2 470 IPR006534 GO:0008553|GO:0016020|GO:0120029
Stsc241743g00021 474 SUPERFAMILY HAD-like 147 456 IPR036412 -
Stsc241743g00021 474 SFLD p-type atpase 133 461 IPR044492 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241743g00021 Stsc-Chr241743 88209 90284 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241743g00021 2 470 Primary Pumps ATPases AT1G17260 85.714 0.0 848
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241743g00021 K01535 - gmx:100795836 865.529