Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241742g00022 ATGGCGGATGCGGAAAAAGATTCCGGTGGCGGCGAAGAAACAAAGTACCGGGGAGTAAGGAAGAGACCGTGGGGGAAGTATGGAGCCGAGATAAGGGATCCTTCCCGGCCTACCGGAAGGATGTGGCTTGGGACATTCGACACGGCTGAGGAAGCAGCTAGAGCTTATGATCGAGCAGCCATTGCTCTGAGGGGTGGCCTTGCCATCCTTAATTTTCCAGATGAATATCATTCGCATCTCCCATTTATAGCTTCATCATCTTCTTATTCTAGTTCTTCCATTGGATCAAGTTCTTCTTCATCCAGGGCACAACAGGGGAGGGAAGTTATTGAGCTTGAGTATTTGGACAATAAGATACATAAATGTGTGGATGTGGAGGATGAGCTTATTGTTTGTGACAACAACTCCGAATTGAAGAACTTGGCAATCTAA 432 0.4699 MADAEKDSGGGEETKYRGVRKRPWGKYGAEIRDPSRPTGRMWLGTFDTAEEAARAYDRAAIALRGGLAILNFPDEYHSHLPFIASSSSYSSSSIGSSSSSSRAQQGREVIELEYLDNKIHKCVDVEDELIVCDNNSELKNLAI 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241742g00022 143 Gene3D AP2/ERF domain 14 74 IPR036955 GO:0003700|GO:0006355
Stsc241742g00022 143 SMART rav1_2 15 78 IPR001471 GO:0003700|GO:0006355
Stsc241742g00022 143 PANTHER DNA-BINDING DOMAIN 10 116 IPR044808 GO:0003700|GO:0009873
Stsc241742g00022 143 FunFam Ethylene-responsive transcription factor 2 14 75 - -
Stsc241742g00022 143 SUPERFAMILY DNA-binding domain 15 75 IPR016177 GO:0003677
Stsc241742g00022 143 CDD AP2 14 74 IPR001471 GO:0003700|GO:0006355
Stsc241742g00022 143 PRINTS Ethylene responsive element binding protein signature 39 55 IPR001471 GO:0003700|GO:0006355
Stsc241742g00022 143 PRINTS Ethylene responsive element binding protein signature 16 27 IPR001471 GO:0003700|GO:0006355
Stsc241742g00022 143 ProSiteProfiles AP2/ERF domain profile. 15 73 IPR001471 GO:0003700|GO:0006355
Stsc241742g00022 143 MobiDBLite consensus disorder prediction 86 105 - -
Stsc241742g00022 143 Pfam AP2 domain 14 65 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241742g00022 Stsc-Chr241742 100706 103385 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241742g00022 12 127 AP2-EREBP Transcription Factor Family AT3G23230 56.198 1.55e-37 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc241742g00022 AP2 1.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241742g00022 - - adu:107483754 184.111