Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241742g00002 ATGTTGCTCTCTTTTTATTCTTATTCTTTTAAACATGTTGCAGTTGGGGTAGTGGTCAAAGTAGCCATTGTAATTTGTGTATGCCGTCAAAGGTTTAAGAATAAAGGTGGACCAGTTCGTCCAGCTATACCTTTCTTGACAATCACCATTGATAAGTTTCTCAATGATATTGAAAGGGAGAAGCCAATCAGATTCACGGATCAGCAACTACGTATTGCCACTGATAACTACTCCAATTTGTTGGGATCAGGAGGTTTCGGTGCAGTTTACAAAGGAATCTTCAGCAACGGCAAAATGGTAGCTGTGAAGGTTCTGTATGGAAGTAATGACAAAAGAATTCAAGAACAGTTCATGGCAGAAATGGGAACACTTGGTAGGGTCCACCACTTCAATCTTGTACGGCTCTATGGGTTTTGTTTAGAGAGGAATTTGATAGCACTGGTTTATGAGTATATGGGAAATGGATCTCTTGACAGGTATTTGTTCAAGGAAATTAAGGCTTTGGAATTCGAAAAGCTTCATGAGATTGCGGTTGGAACAGCAAGAGGGATTGCTTATTTGCATGAAGAGTGTCAACAGAGGATAATCCATTATGATATAAAACCAGGGAATATTCTCTTGGACATGAATTTCAATCCTAAAGTTGCGGATTTTGGTTTGGCTAAGCTTTGTAACAGGGATAATACTCATATAACCATGACCGGAGGCAGGGGAACTCCCGGTTATGCCGCGCCGGAGCTTTGGATGCCGTTTCCTGTCACTCACAAATGTGATGTTTACAGCTTTGGCATGTTGTTATTTGAAATCATAGGGAGGAGAAGAAACGTAGACACGAATCTTTCGGAAAGCCAAGAATGGTTTCCAATGTGGGTTTGGAAGAAATATGACGCCGGAGAGTTGGGGAATTCGAAAGTAGTGGCGGGGATGGAGGAGAAGCACAAGGAAATGACAGAGAGGATGGTTAAGGTAGCTCTATGGTGTGTCCAATATAGGCCAGAAGTAAGGCCTGATATGAGTGTTGTGGTGAAAATGTTGGAAGGTTCAGTGGAGATTCCAGAACTAAAAATGAATCCATTTCAACACATGATTGGGGGTACTGTTGTTGCTCACCCAGTACAAGTTTCACAAGGATACACTGAAAGCAGTAGCATGTATACTGGATCTTCTATTATGGTAACTGATGTGGAAGACAAAATGATGATGTTGGNNNNNNNNNNATTTTTTGAAGCATCATAA 1236 0.4078 MLLSFYSYSFKHVAVGVVVKVAIVICVCRQRFKNKGGPVRPAIPFLTITIDKFLNDIEREKPIRFTDQQLRIATDNYSNLLGSGGFGAVYKGIFSNGKMVAVKVLYGSNDKRIQEQFMAEMGTLGRVHHFNLVRLYGFCLERNLIALVYEYMGNGSLDRYLFKEIKALEFEKLHEIAVGTARGIAYLHEECQQRIIHYDIKPGNILLDMNFNPKVADFGLAKLCNRDNTHITMTGGRGTPGYAAPELWMPFPVTHKCDVYSFGMLLFEIIGRRRNVDTNLSESQEWFPMWVWKKYDAGELGNSKVVAGMEEKHKEMTERMVKVALWCVQYRPEVRPDMSVVVKMLEGSVEIPELKMNPFQHMIGGTVVAHPVQVSQGYTESSSMYTGSSIMVTDVEDKMMMLXXXXFFEAS 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241742g00002 411 FunFam Putative receptor-like protein kinase 152 353 - -
Stsc241742g00002 411 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Stsc241742g00002 411 Gene3D Phosphorylase Kinase; domain 1 50 151 - -
Stsc241742g00002 411 SUPERFAMILY Protein kinase-like (PK-like) 60 346 IPR011009 -
Stsc241742g00002 411 CDD STKc_IRAK 81 347 - -
Stsc241742g00002 411 ProSiteProfiles Protein kinase domain profile. 75 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241742g00002 411 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 15 353 - -
Stsc241742g00002 411 SMART serkin_6 75 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241742g00002 411 ProSitePatterns Protein kinases ATP-binding region signature. 81 103 IPR017441 GO:0005524
Stsc241742g00002 411 Pfam Protein tyrosine and serine/threonine kinase 79 345 IPR001245 GO:0004672|GO:0006468
Stsc241742g00002 411 Gene3D Transferase(Phosphotransferase) domain 1 152 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241742g00002 Stsc-Chr241742 1 1872 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241742g00002 64 359 Receptor kinase-like Gene Family AT5G38280 41.447 8.84e-77 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Stsc241742g00002 PK_Tyr_Ser-Thr 7.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241742g00002 - - gmx:100803355 608.986