Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241742g00001 ATGTCAAGCACAGATGGTGGTGCAGATTACACAGGAATTTATGTAGCTATCATCGTTGTTGGGGTAGTGGTCAAAGTAGCCATTGTAATTTGTGTATGCCGTCAAAGGTTTAAGAATAAAGGTGGACCAGTTCGTCCAGCTATACCTTTCTTGACAATCACCATTGATAAGTTTCTCAATGATATTGAAAGGGAGAAGCCAATCAGATTCACGGATCAGCAACTACGTATTGCCACTGATAACTACTCCAATTTGTTGGGATCAGGAGGTTTCGGTGCAGTTTACAAAGGAATCTTCAGCAACGGCAAAATGGTAGCTGTGAAGGTTCTGTATGGAAGTAATGACAAAAGAATTCAAGAACAGTTCATGGCAGAAATGGGAACACTTGGTAGGGTCCACCACTTCAATCTTGTACGGCTCTATGGGTTTTGTTTAGAGAGGAATTTGATAGCACTGGTTTATGAGTATATGGGAAATGGATCTCTTGACAGGTATTTGTTCAAGGAAATTAAGGCTTTGGAATTCGAAAAGCTTCATGAGATTGCGGTTGGAACAGCAAGAGGGATTGCTTATTTGCATGAAGAGTGTCAACAGAGGATAATCCATTATGATATAAAACCAGGGAATATTCTCTTGGACATGAATTTCAATCCTAAAGTTGCGGATTTTGGTTTGGCTAAGCTTTGTAACAGGGATAATACTCATATAACCATGACCGGAGGCAGGGGAACTCCCGGTTATGCCGCGCCGGAGCTTTGGATGCCGTTTCCTGTCACTCACAAATGTGATGTTTACAGCTTTGGCATGTTGTTATTTGAAATCATAGGTAAGTAG 834 0.4113 MSSTDGGADYTGIYVAIIVVGVVVKVAIVICVCRQRFKNKGGPVRPAIPFLTITIDKFLNDIEREKPIRFTDQQLRIATDNYSNLLGSGGFGAVYKGIFSNGKMVAVKVLYGSNDKRIQEQFMAEMGTLGRVHHFNLVRLYGFCLERNLIALVYEYMGNGSLDRYLFKEIKALEFEKLHEIAVGTARGIAYLHEECQQRIIHYDIKPGNILLDMNFNPKVADFGLAKLCNRDNTHITMTGGRGTPGYAAPELWMPFPVTHKCDVYSFGMLLFEIIGK 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241742g00001 277 Pfam Protein kinase domain 84 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241742g00001 277 SUPERFAMILY Protein kinase-like (PK-like) 65 275 IPR011009 -
Stsc241742g00001 277 FunFam serine/threonine-protein kinase PBS1-like 55 156 - -
Stsc241742g00001 277 SMART serkin_6 80 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241742g00001 277 FunFam Os07g0541700 protein 157 244 - -
Stsc241742g00001 277 ProSitePatterns Protein kinases ATP-binding region signature. 86 108 IPR017441 GO:0005524
Stsc241742g00001 277 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 12 275 - -
Stsc241742g00001 277 ProSiteProfiles Protein kinase domain profile. 80 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241742g00001 277 Gene3D Transferase(Phosphotransferase) domain 1 157 277 - -
Stsc241742g00001 277 ProSitePatterns Serine/Threonine protein kinases active-site signature. 200 212 IPR008271 GO:0004672|GO:0006468
Stsc241742g00001 277 Gene3D Phosphorylase Kinase; domain 1 55 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241742g00001 Stsc-Chr241742 1 1872 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241742g00001 69 276 Receptor kinase-like Gene Family AT5G38280 46.226 9.43e-60 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Stsc241742g00001 Pkinase 3.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241742g00001 - - gmx:100803355 453.751