Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241740g00022 ATGGGTTCCGCCACCAGTAGACTAGGGCCTTCTCGCCCTCCCCCGCCCACTCTCAACCGCAACAACACGCGCTTCAAGCTCTCCTCTCTTCTCTGCGGTGCTTCCACCTCTCGCTCCACCTATCAGATGGAAGAACATCCATCTGAACTTCAGGTAGATTCAGCAACACAACTTGATGAAGGAACTCAGGAAATCACTGAGGAATCATCTTTATCCAGCTGCAGCTGCCATGCAGAAGCCTCTACCTCATCCGATACAAGAAATGAGTCTCATCAGCATACTGGTTTTGAAGGTTATTCTGTAAATGTCGCAGCAAGTAGTCAGAGAAAGTGCTTGTCTGAAAGTAAGGAGCTAGTCCCTCCTCATCAGGTAAGTGCTCGTCATAGTGGTAATGAATCATATAGGGATAGTAGCAACACAGCTAGTACTTCTTTTGTAGAGCAAGAATCTTCAGGTCCAGTCTCTGTAAATGTTTCTGCTAACAAGGATGGAGTCGATAATGTTGATGATCCAGTGGTTAGTGGTGTATCTCAAATCTCTCACGAGACAGTGCGTCCAAGGAGTTCAAGCCCTGAGGAGCATGGATATTTTAGTTCTGGAGAAATTTCTGTTGAGAATCACACTGATGCATTTATGGCTATCCAGAGTCCCTCTTTGGATCCCGTTTCTCAAGTTTCCAATTTACCAGCACCTTCTCCTATGCCCGAAGATGAACCTCGCAGAGAGGCAATACCTTCAGGTTTAGGTATCCTTGTGTCTAATCGGGAAAGAGTGCAGGGAAATGATAGTGTGCTTCAAGTTGATGTGGTCACAATATCCTCCAACATCCTGTCTGGCAGCACTGCTGATGCCAGTGAGCATGATACCGGAAGGAGTGGTAGAAGATTATTTTGGGATGCTTTTTCACGGCGTAATTCTAGAAGGCTTGGTGACTCTCAAACAATTGTCTTCTCTGCTGGCGGTGCTGATGATCCTGGATCTCAAGATAGATGGCTTGTTGATCTTGGTGGGGATTTCTCAAACGATGGGTTTGGAGGTGCTTCTTCTGGATATGTGGGCAGTAGAATTCACAGATTTAATGAAAGAATGCGGCACTCAAGATCTGAGATCTGGGAAAGGCTTCGAGGTGGCCTTGATGATTTTGGTCGTTTGAATTCTTCCTGTCCATCAGGACTTCATGCAGATGAGTTAATTTGTCTTGGCTTTCTATCATTGTCACATGTTCTTATTGGTTTAAGCCTGGTTTTAGATGAAATCCATCGGCAGCCCGTATCGCTTTCCCTATCCATGGTTTCTCTCCCTGCACCTGAATCAGTTGTCGACTCTTTCCCTCTTAAGTCTCACAAAAAGGTTGATGCAGCTGAAGGTGGCAATGATGCTGAACAATGTTACATATGTTTGGCGGAGTATGAAGAAGGGGACCAAATTCGAGTTCTTCCTTGCAACCATGAGTATCACATGTCCTGCGTTGATAAGTGGCTTAAAGAAATACATGGCGTATGTCCTCTTTGTCGTGGCAATGTTTGTGGAGGGTTCACGGAGTCTTCTGCGCACTGA 1557 0.4573 MGSATSRLGPSRPPPPTLNRNNTRFKLSSLLCGASTSRSTYQMEEHPSELQVDSATQLDEGTQEITEESSLSSCSCHAEASTSSDTRNESHQHTGFEGYSVNVAASSQRKCLSESKELVPPHQVSARHSGNESYRDSSNTASTSFVEQESSGPVSVNVSANKDGVDNVDDPVVSGVSQISHETVRPRSSSPEEHGYFSSGEISVENHTDAFMAIQSPSLDPVSQVSNLPAPSPMPEDEPRREAIPSGLGILVSNRERVQGNDSVLQVDVVTISSNILSGSTADASEHDTGRSGRRLFWDAFSRRNSRRLGDSQTIVFSAGGADDPGSQDRWLVDLGGDFSNDGFGGASSGYVGSRIHRFNERMRHSRSEIWERLRGGLDDFGRLNSSCPSGLHADELICLGFLSLSHVLIGLSLVLDEIHRQPVSLSLSMVSLPAPESVVDSFPLKSHKKVDAAEGGNDAEQCYICLAEYEEGDQIRVLPCNHEYHMSCVDKWLKEIHGVCPLCRGNVCGGFTESSAH 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241740g00022 518 MobiDBLite consensus disorder prediction 18 83 - -
Stsc241740g00022 518 MobiDBLite consensus disorder prediction 126 162 - -
Stsc241740g00022 518 Pfam Ring finger domain 462 505 IPR001841 -
Stsc241740g00022 518 MobiDBLite consensus disorder prediction 110 169 - -
Stsc241740g00022 518 MobiDBLite consensus disorder prediction 1 96 - -
Stsc241740g00022 518 SMART ring_2 463 504 IPR001841 -
Stsc241740g00022 518 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 428 509 IPR013083 -
Stsc241740g00022 518 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 517 - -
Stsc241740g00022 518 ProSiteProfiles Zinc finger RING-type profile. 463 505 IPR001841 -
Stsc241740g00022 518 FunFam Putative RING zinc finger domain superfamily protein 430 510 - -
Stsc241740g00022 518 MobiDBLite consensus disorder prediction 220 242 - -
Stsc241740g00022 518 SUPERFAMILY RING/U-box 449 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241740g00022 Stsc-Chr241740 108443 111563 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241740g00022 408 509 C3H Transcription Factor Family AT5G45290 55.856 1.41e-30 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241740g00022 - - gmx:100783604 708.753