Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241740g00020 ATGACTGCAGCAGCCACCATGTGTGTTGAAGAAGGTGAGCAAGTTGAGCATCATGATCATCAAGATGTGGAGATTAAGAAGGACGACCTAATTCACAACACAAGAAGGTGGCCTTTGCATTGTGATCATCTCTTGATGGACAACACACAAACACAAACACCATCTTCTTTTACATCTTCCACTGCTAATTCACTCCCTCTGGAAAGCATATGTGAGGAGACAGTGATTGCAGACAAGAAACAGAACGTTACAAGCTATGTCCCCACTCTCCGGTCCGGAGAGTGGTCTGACATCGGAGGCCGGCCTTACATGGAGGATACACACATATGTATTGGAGACTTGGCAAAAAGATTTGGATATAATAACAACCTACTCTCTGAGGAAGCTGTTTCATTCTATGGTGTATTTGATGGACATGGAGGGAAGAGCGCGGCTCAATTCGTGCGTGATCATCTGCCAAGGGTCATTGTTGAGGATGCTGACTTCCCTTTGGAACTTGAGAAGGTTGTCACAAAGTCTTTTTTGGATACTGATGCAGAACTTAAGACATACTCTCTTGAATCTTCATTATCTTCTGGAACTACTGCACTCACTGCAATTATATTCGGAAGGTCATTGCTTGTAGCCAATGCAGGAGACTGCAGGGCTGTGTTGTCGCGCCACGGGGCAGCAATAGAAATGTCCAAGGATCATAGACCTTACTGCATTAAAGAAAGAAAGCGCATAGAGTCCCTAGGTGGATTCATTGATGATGGCTACCTTAATGGCCAGTTAGGTGTCACGCGCGCTCTAGGCGACTGGCATCTAGAAGGAATGAAGGAAACAAGTGGAGGTGGACCATTGAGTGCTGAGCCTGAACTCAAATTGATGACATTGACCAAAGAAGATGAATTCTTGATCATAGCAAGTGATGGAATTTGGGATGTTTTCCGTAGCCAAAACGCAGTGGATTTCGCTAGGAGGAGGCTTCAAGAACACAATGATGTGAAGCAATGCTGCAAGCAAATAGTAGAGGAAGCAATTAAGAGAGGAGCAACAGATAACTTAACGGTTGTGATGGTATGTTTTCACTCAGATCCACCACCACCTGTGATTGTGGAAAGATCAAGAGTTAGAAGAAGCATATCTGCTGAGGGACTGCAGAACCTTAAATGCCTACTACAGGGTTAA 1170 0.4462 MTAAATMCVEEGEQVEHHDHQDVEIKKDDLIHNTRRWPLHCDHLLMDNTQTQTPSSFTSSTANSLPLESICEETVIADKKQNVTSYVPTLRSGEWSDIGGRPYMEDTHICIGDLAKRFGYNNNLLSEEAVSFYGVFDGHGGKSAAQFVRDHLPRVIVEDADFPLELEKVVTKSFLDTDAELKTYSLESSLSSGTTALTAIIFGRSLLVANAGDCRAVLSRHGAAIEMSKDHRPYCIKERKRIESLGGFIDDGYLNGQLGVTRALGDWHLEGMKETSGGGPLSAEPELKLMTLTKEDEFLIIASDGIWDVFRSQNAVDFARRRLQEHNDVKQCCKQIVEEAIKRGATDNLTVVMVCFHSDPPPPVIVERSRVRRSISAEGLQNLKCLLQG 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241740g00020 389 ProSiteProfiles PPM-type phosphatase domain profile. 91 356 IPR001932 -
Stsc241740g00020 389 Pfam Protein phosphatase 2C 103 348 IPR001932 -
Stsc241740g00020 389 PANTHER PROTEIN PHOSPHATASE 2C 78 354 IPR015655 GO:0004722|GO:0006470
Stsc241740g00020 389 Gene3D - 72 359 IPR036457 -
Stsc241740g00020 389 FunFam Probable protein phosphatase 2C 22 74 359 - -
Stsc241740g00020 389 CDD PP2Cc 91 356 IPR001932 -
Stsc241740g00020 389 ProSitePatterns PPM-type phosphatase domain signature. 132 140 IPR000222 GO:0043169
Stsc241740g00020 389 SMART PP2C_4 81 354 IPR001932 -
Stsc241740g00020 389 SUPERFAMILY PP2C-like 81 357 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241740g00020 Stsc-Chr241740 96656 98713 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241740g00020 80 389 PP2C-type Phosphatase Gene Family AT2G25620 60.443 3.35e-133 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Stsc241740g00020 PP2C 1.1e-69 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241740g00020 K14803 - gmx:100782648 563.533