Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241740g00018 ATGGGGAGTACTGGTACTGATAAGATGCCAGGCAATAACAGCACAGGAAGTTCAGAAGCCACTATTGAGATAAAGATCAAAACCTTGGATTCACAGACCTACACTCTCAGAGTGGATAAACAGATGCCAGTCCCTGCTCTGAAAGAACAAATTGCTTCTGTGACTGGAGTGTTATCAGATCGGCAGCGCTTAATTTGTCAAGGAAAGGTTCTGAAGGATGATCAACTCCTATCTGCATACCATGTTGAAGATGGTCATACCTTGCATCTGGTTTCTAGGCAACCTGATCTATCAGGAAGTTTGCCCAATCATTCAGGGGCTGACCCAAATTCAAGCACAAGTCATGGTCATAGTAGTCAAATATCCCCGGGTGTATTCATTGAAACTTTCAATGTGCCTGTTCAGGGAGATGGAGTTACTCCTGAATTCAGTAGGATTGTTTCTGCTGTACTAGGATCTATTGGAATTCCTTTCGGAAGTGGTGTTGAAGGGATTGATGTCAGGGAGCATGATTCTCAGGGATTTGGAAGAACTTCAGGTACCAGTGGTCTGTCTGATTCGTCTCATCCTCATCCTGAACTAGCTGGTTTGAGGTCTTCGTCAGATAGGTTGCGTAATCCCTTTGTACATCCAGCAGCAGCTTCTCTGGGTTCTCTGCAGCCTCCTGTTATTCCTGATTCTTTGACGACACTATCCCAATTTCTGAGTCATATCAGTCACGAATTTGATGCAATTGTCAGAGAAGGGGGCAATAATGTCCCAGCAGCTGAGGCTCATAGGAATGTAGATATGGGGTCTGCTTCTTCACGATTGGGTTCAACACCAGAAGCACTTTCATCACCTGCATCCTTGGCAGAAATCATGCTCTCTTCCAGACAAATGATGATTGAACAAGCTGGGGAGTGCCTACTTCAACTTGCAAGGCAGTTGGAGAATCAGGCAAATGTAACTGATCCTTTGATGCGATCAAGCATTCAGTCTAGGGCTTTGAGGACTGGAGTTCTATTCTATAACCTAGGTGCATTATTCCTTGAGCTTGGTCGCACAACCATGACATTGCGTTTGGGTCAAAGTCCGTCTGAAGCTGTAGTTAATGGCGGGCCTGCAGTTTTCGTATCTCCATCTGGTCCTAACCATATCATGGTTCAGCCTCTTCCTTTTCAACCTGGAGCGAACTTTGGTACTGTCCCCATAGGGAATGCTCAGTCTAATGCAAGTTTAGGTAGTGGACTTGGTTCAAGTTTTTTCCCACGGCGGATTGATATACAGATACGACGAGCCACACCAAATGCCAGTCAAGAAGAACGTGTTGATACACAGTCTGCTTCAGCACAAAGAAATCAAGGTGAAGGTCCTGCTAATCAGGCAACCTCAAGGCGTCCAGATGTGGCTGGTGCTGGGGAGCAAGGAGTGAGGATTTTGCCAATTAGAACCATGGTTGCAACAGTACCAGGTTCCTTAGGTCGTCCACCTTCAGAACCATCTGGTAATTCTATTGGGGTTTACTATCCGGTTCTCGGGAGATTTCAACAGGTATCTTCAGGGCATGGTAATAGTGAACAGGGATCCCAACCACCTAGTCAGCATCATGCTGTGCAACAGTCAAGTCATGAAAACACGTTGCGAAGGCAAAGTGAGGATTCTACAAGGAATGGATCCTCATCAACTCCTACCACAAGCTCTAGTTCCCGTGTGGTGAATATCAATATCCTATCAGCTGGTAGAGCCCAGAATAATCCGGAATCTGAGCGACAGATACCAAACAGTGTTCTTCAGTTTATAAGGACACTGTTTCCTGGGGGAGAAGTTCATGTTGAAGACTTGAATTTACAGGGAACAAATTCAGGTTCTACCTCAGAACCAGCTGCAACAGCAAGTGCAGCTCAGGCCCCTGAAGCTGAACCTAGAGTTAGTGATGAAGGACTATTTTTGTCTAACATACTCCGCGAAATCATACCTCGTGTAACTCAACAAACAGTCTCTGGAAGAAATCCTTCAGAGGAACAAGCAGCTCAGGATTCTTCATCACAGGTGGAAACCGATGCAGGGACATCACGGAGGCGGAATGGTTCAGATCCAAGCCCCCCTGATTCTAAACGCCAAAAGATGGAGTGA 2115 0.4591 MGSTGTDKMPGNNSTGSSEATIEIKIKTLDSQTYTLRVDKQMPVPALKEQIASVTGVLSDRQRLICQGKVLKDDQLLSAYHVEDGHTLHLVSRQPDLSGSLPNHSGADPNSSTSHGHSSQISPGVFIETFNVPVQGDGVTPEFSRIVSAVLGSIGIPFGSGVEGIDVREHDSQGFGRTSGTSGLSDSSHPHPELAGLRSSSDRLRNPFVHPAAASLGSLQPPVIPDSLTTLSQFLSHISHEFDAIVREGGNNVPAAEAHRNVDMGSASSRLGSTPEALSSPASLAEIMLSSRQMMIEQAGECLLQLARQLENQANVTDPLMRSSIQSRALRTGVLFYNLGALFLELGRTTMTLRLGQSPSEAVVNGGPAVFVSPSGPNHIMVQPLPFQPGANFGTVPIGNAQSNASLGSGLGSSFFPRRIDIQIRRATPNASQEERVDTQSASAQRNQGEGPANQATSRRPDVAGAGEQGVRILPIRTMVATVPGSLGRPPSEPSGNSIGVYYPVLGRFQQVSSGHGNSEQGSQPPSQHHAVQQSSHENTLRRQSEDSTRNGSSSTPTTSSSSRVVNINILSAGRAQNNPESERQIPNSVLQFIRTLFPGGEVHVEDLNLQGTNSGSTSEPAATASAAQAPEAEPRVSDEGLFLSNILREIIPRVTQQTVSGRNPSEEQAAQDSSSQVETDAGTSRRRNGSDPSPPDSKRQKME 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241740g00018 704 MobiDBLite consensus disorder prediction 656 704 - -
Stsc241740g00018 704 MobiDBLite consensus disorder prediction 546 566 - -
Stsc241740g00018 704 Gene3D - 15 110 - -
Stsc241740g00018 704 ProSiteProfiles Ubiquitin domain profile. 22 97 IPR000626 GO:0005515
Stsc241740g00018 704 MobiDBLite consensus disorder prediction 174 188 - -
Stsc241740g00018 704 MobiDBLite consensus disorder prediction 512 566 - -
Stsc241740g00018 704 MobiDBLite consensus disorder prediction 512 539 - -
Stsc241740g00018 704 Pfam Ubiquitin family 24 94 IPR000626 GO:0005515
Stsc241740g00018 704 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 9 700 - -
Stsc241740g00018 704 MobiDBLite consensus disorder prediction 608 637 - -
Stsc241740g00018 704 PRINTS Ubiquitin signature 53 73 IPR019956 -
Stsc241740g00018 704 PRINTS Ubiquitin signature 74 95 IPR019956 -
Stsc241740g00018 704 PRINTS Ubiquitin signature 32 52 IPR019956 -
Stsc241740g00018 704 MobiDBLite consensus disorder prediction 608 625 - -
Stsc241740g00018 704 SUPERFAMILY Ubiquitin-like 17 95 IPR029071 -
Stsc241740g00018 704 MobiDBLite consensus disorder prediction 426 455 - -
Stsc241740g00018 704 MobiDBLite consensus disorder prediction 426 470 - -
Stsc241740g00018 704 MobiDBLite consensus disorder prediction 656 691 - -
Stsc241740g00018 704 SMART ubq_7 22 93 IPR000626 GO:0005515
Stsc241740g00018 704 MobiDBLite consensus disorder prediction 170 203 - -
Stsc241740g00018 704 FunFam Large proline-rich protein BAG6 14 107 - -
Stsc241740g00018 704 MobiDBLite consensus disorder prediction 93 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241740g00018 Stsc-Chr241740 74178 81601 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241740g00018 22 93 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 38.889 5.24e-09 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241740g00018 K23390 - gmx:100783070 976.081