Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241740g00005 ATGGGGAAGAAAAAGAAGCAAGTAGGAGAAACAAGTGAAGATGGTGGAAATCAAAGCCGAGTGGTGGTAGATAGCAGCAGTATCGACTATGAGAGTGATTCTGCATCATCATCATCTATGGATGTGTATCAGGATTTGAAGGATGAGGGGAACAAGCTGTTCCAAAGGAGGGACCCTAGAGGGGCTTTGCTGAAATATGAGAAAGCTCTCAAATTGTTACCAAGGAATCATGCAGATGTGTCATATCTGAGGAGTAACATGGCTGCATGCTACATGCAGATGGGGCGAAGCCAGTACCCAAGGGCGATTCGTGAATGCGATTTGGCTCTTGAGGTAACACCGAAATACAGCAAAGCTCTGTTGAAGAGGGCAAGGTGCTATGAGGCTTTAAATAGGCTGGATTTAGCTCTCAAGGATGTTAGTGCTGTTGTGGAGACAGATCCAAATAATGCCACAGCCTTGGAGATCTCGGAAAAGGTGAAAATTGCACTTGAGATGAAAGGGTTGAGAGTAAATGGTTCAATAATTGAATTGCCTCCAGACTATGTTGAACCCCCTAGTCCTGTACCCCAAGAAACCCCGTCGTCGAAAGAGAAGGGCCGCAAGAAAAAGGGCAATAAACAGGAGGAGAAGGCTCCTGATAACAAAATTGTACAAAAGCAAGACAAGAAGGAATTTGCAGCAGAGGATAAGGCTGATGACAGTGTTGTTGAGAAGAAGACGAACAAATCCAAAAAGAAGAAGGCCAAGGAGAAAGTTGATGAGAAGAAGGATGATATTAAGGAGGTTATAGAGGTGAAAAGAAATGACAGAACAGATGATATACCCAATAGAGTACTAAAAATTGTTTGTGGTGAGGATATAAGATGTGCTCAACTACCTGCTCGTTGCAGCTTCTTGCAGCTAAGAGAAATTATTTACTACCGGTTCCCAGGCCTAGGAGCCATTCTTGTCAAATACAGGGACCATGAAGGTGATTTGATTACAATCACTTCTGATGATGAGTTAAGATTGGCTGAAACAGGATCCGAGAGTTCTATCCGGTTGCATATAATAGAAGCTACTCCTGAGCAGGATCGGTTCTTTGAAATGCTCAAAGTAAAGGTGGGGAAAAAGGTTGCCGTGGTTGATGAACCTGATGTTGCTTGTGAGATACCCAGATTTTCATGA 1170 0.4333 MGKKKKQVGETSEDGGNQSRVVVDSSSIDYESDSASSSSMDVYQDLKDEGNKLFQRRDPRGALLKYEKALKLLPRNHADVSYLRSNMAACYMQMGRSQYPRAIRECDLALEVTPKYSKALLKRARCYEALNRLDLALKDVSAVVETDPNNATALEISEKVKIALEMKGLRVNGSIIELPPDYVEPPSPVPQETPSSKEKGRKKKGNKQEEKAPDNKIVQKQDKKEFAAEDKADDSVVEKKTNKSKKKKAKEKVDEKKDDIKEVIEVKRNDRTDDIPNRVLKIVCGEDIRCAQLPARCSFLQLREIIYYRFPGLGAILVKYRDHEGDLITITSDDELRLAETGSESSIRLHIIEATPEQDRFFEMLKVKVGKKVAVVDEPDVACEIPRFS 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241740g00005 389 Gene3D Tetratricopeptide repeat domain 40 168 IPR011990 GO:0005515
Stsc241740g00005 389 Pfam PB1 domain 279 351 IPR000270 GO:0005515
Stsc241740g00005 389 SMART tpr_5 117 150 IPR019734 GO:0005515
Stsc241740g00005 389 SMART tpr_5 81 116 IPR019734 GO:0005515
Stsc241740g00005 389 SMART tpr_5 43 76 IPR019734 GO:0005515
Stsc241740g00005 389 Gene3D - 277 357 - -
Stsc241740g00005 389 ProSiteProfiles TPR repeat profile. 117 150 IPR019734 GO:0005515
Stsc241740g00005 389 MobiDBLite consensus disorder prediction 178 254 - -
Stsc241740g00005 389 SMART PB1_new 277 354 IPR000270 GO:0005515
Stsc241740g00005 389 MobiDBLite consensus disorder prediction 1 41 - -
Stsc241740g00005 389 CDD PB1 279 351 - -
Stsc241740g00005 389 SUPERFAMILY CAD & PB1 domains 273 352 - -
Stsc241740g00005 389 SUPERFAMILY TPR-like 39 156 IPR011990 GO:0005515
Stsc241740g00005 389 Coils Coil 239 266 - -
Stsc241740g00005 389 MobiDBLite consensus disorder prediction 12 41 - -
Stsc241740g00005 389 MobiDBLite consensus disorder prediction 195 241 - -
Stsc241740g00005 389 PANTHER PROTEIN CLMP1 3 367 IPR044517 -
Stsc241740g00005 389 ProSiteProfiles PB1 domain profile. 277 354 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241740g00005 Stsc-Chr241740 19195 20462 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241740g00005 15 150 Calmodulin-binding Proteins AT3G25230 30.675 2.14e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241740g00005 K26538 - gmx:100778972 409.068