Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241739g00016 ATGATGGCAAATAACCTTGCGGGCCGGTTAGTAGGCTCAGAGATTCATGGATTCCACACATTGCAAGACTTGGACTTGGGAAACATAATGGAGGAAGCAAGAACCAGATGGCTTCGTCCCAATGAGATTCACGCCATACTTTGCAATTCCAAGTACTTCACAATCAATGTCAAGCCAGTGAATTTGCCCACATGTGGTACTATTGTACTTTTTGACCGCAAGATGCTTAGGAACTTTCGGAAAGATGGGCACAACTGGAAAAAGAAAAAGGATGGTAAAACTGTTAAAGAAGCTCATGAGCACTTAAAAGTTGGTAATGAAGAAAGGATCCATGTCTATTATGCGCATGGCCAAGATAACCCAGGCTTTGTTCGCAGATGTTATTGGTTACTTGATAAGAGTTTGGAACACATAGTCCTTGTTCATTATCGTGAAACACAGGAGTTGCAAGCTTCTCCTCCCGCACCCATAAATTCACACTCCAGTTCTGGCTCTAATCCAACTGCCCCATGGATTTTATCCGAAGAAATAGATTCTGGGATCAAAACTGCAAATGCTGGTGAGATTAATAACAATTTAACTGTCACAAGTCACGAGCAAAGGCTTCATGAGATTAATACACTTGAATGGGATGACCTAGTGGTTGCAAATGATCCAAACACGTTGACTGTGGTTAATGGAGGAAGCAAAGCTCCACATTTTGATCAACAGAATCAAAGTAATCTCAGCAATGTAGCCAACTCAGAAATCCCATCTTTTGAAAATGTAACCCAACAAATTGCTGGGAGTCACACTTTTCCGGAAAATGTTAATCTTCAGACAGACAATCAAATGAATCCAAATGAGCACATTAATCATAATGTCTCCGGTAATGGTGTTACCTTGGACACTTTGGGCAATGGTGGATTGCAAAGTCAGGATAGCTTTGGAATGTGGGTGAACCATATCTTGTCTGATTCGCCATGTTCCGTAGATGAGTCAGCCGTTGAATCATCAGTGTCATCCATTCACGAATCATATCCTTCTCTAGGTGTGGATGATAAGCAAACTGCTTTGCCAGAACAAGTATTTAATCTGACTGATGTGTCACCTGCATGGGTGCCTTCTACTGAGAATTCAAAGATCCTCGTGACTGGATTCTTTCTTAAGGACCACCCACATCTTTCAAAGTCCAATCTGTTGTGTGTCTGTGGTGATGTAAGTGTTCCTGCAGAATGTGTTCAGGCTGGGGTCTACCGATGCTGGTTCCAGATGAGGCTTTCTTATCTGCTTTTTAACAAAAAGAATAGTCTTGATGTTTTCACTTCTACAGTATCACCTAATAGACTAAAGGAGGCGAGAAACTTTGCCACCAGAACGTCATTTATTTCCAGCAGTTGGCAAGACTTGATGAAGTCAACTCAATACAACAGAATTCCATATTCACAAGCAAAAGACGACCTATTTGGGATTTCTATAAGAAGCAGACTAAAGGAGTGGATTTTAGAAAGAATTATTTTAGGCTGTAAGACTAATGCATATGATGCACAAGGCCAAAGTGTAATCCATTTGTGCGCAATTCTGGATTATACTTGGGCTGTTTCCCTATTTTCATGGTCAGGCTTGTCACTGGATTTCCGTGACAAGTTTGGGTGGACAGCTCTTCATTGGGCAGCATATTATGGAAGGGAGAAAATGGTTGCAACTCTGTTGTCAGCTGGGGCAAAGCCAAATTTGGTTACGGATCCAACTCCACAAAATCCTGGTGGACTATATGCTTCTGATCTTGCATATATGAATGGTTATGATGGCTTAGCAGCTTATCTTTCGGAAAAGGCTCTGGTTGGGCAATTCAATGACATGAGTTTAGCTGGAAATATCAGCGGCCAGCTGGAAACCAGCACAACTGACCCAGCAGATCCTGAGAACCTCCCAGAGGACCAGCGGTACCTGAAGGATACATTGGCAGCTTATCGAACAGCTGCTGAGGCAGCAGCACGCATACAAGCTGCATTTCGGGAGCATTCCCTAAAACTGCAAACTGAAACCATAGAGGTTTTAACTCCAGAGGCTGAAGCACGCAAAATAGTAGCAGCAATGAAAATTCAGCATGCCTTTAGGAACTTCGAGTCAAGGAAAATGATGAAAGCTGCCGCTCGCATTCAGTACACATTCCGCACGTGGAAGATTCGCAGAGAATTCCTCAACATGCGTCGTCAGGCTATTAAAATTCAAGCTGCTTTCCGGTGCTTTCAAGAGAGGAAGCATTATCGTAAAATTTTGTGGTCTGTTGGGGTGGTCGAGAAAGCACTATTGCGTTGGCGTTTAAAGAGAAAAGGTTTGCGTGGGCTGCATGTTAACACTGCTGATCAGAAGCAGGAAGGCAATGGAGAGGAGGAATTCTTTCGAATTGGTAGGAAGCAAGCTGAAGAACGCGTTGAGAGATCTGTAGTGCGTGTTCAGGCCATGTTCCGATCAAGGAAGGCACAAGAAGATTATAGCAGGATGAAGCTGGCCCTTAATCAAGCAAATCTGGATCGAGAATATGAAGAATTCTTTCATACTGAGGATAACATGGAAACTAGTACATAG 2571 0.4286 MMANNLAGRLVGSEIHGFHTLQDLDLGNIMEEARTRWLRPNEIHAILCNSKYFTINVKPVNLPTCGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDNPGFVRRCYWLLDKSLEHIVLVHYRETQELQASPPAPINSHSSSGSNPTAPWILSEEIDSGIKTANAGEINNNLTVTSHEQRLHEINTLEWDDLVVANDPNTLTVVNGGSKAPHFDQQNQSNLSNVANSEIPSFENVTQQIAGSHTFPENVNLQTDNQMNPNEHINHNVSGNGVTLDTLGNGGLQSQDSFGMWVNHILSDSPCSVDESAVESSVSSIHESYPSLGVDDKQTALPEQVFNLTDVSPAWVPSTENSKILVTGFFLKDHPHLSKSNLLCVCGDVSVPAECVQAGVYRCWFQMRLSYLLFNKKNSLDVFTSTVSPNRLKEARNFATRTSFISSSWQDLMKSTQYNRIPYSQAKDDLFGISIRSRLKEWILERIILGCKTNAYDAQGQSVIHLCAILDYTWAVSLFSWSGLSLDFRDKFGWTALHWAAYYGREKMVATLLSAGAKPNLVTDPTPQNPGGLYASDLAYMNGYDGLAAYLSEKALVGQFNDMSLAGNISGQLETSTTDPADPENLPEDQRYLKDTLAAYRTAAEAAARIQAAFREHSLKLQTETIEVLTPEAEARKIVAAMKIQHAFRNFESRKMMKAAARIQYTFRTWKIRREFLNMRRQAIKIQAAFRCFQERKHYRKILWSVGVVEKALLRWRLKRKGLRGLHVNTADQKQEGNGEEEFFRIGRKQAEERVERSVVRVQAMFRSRKAQEDYSRMKLALNQANLDREYEEFFHTEDNMETST 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241739g00016 856 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 416 833 - -
Stsc241739g00016 856 ProSiteProfiles IQ motif profile. 807 835 IPR000048 GO:0005515
Stsc241739g00016 856 SMART iq_5 805 827 IPR000048 GO:0005515
Stsc241739g00016 856 SMART iq_5 729 751 IPR000048 GO:0005515
Stsc241739g00016 856 SMART iq_5 706 728 IPR000048 GO:0005515
Stsc241739g00016 856 Gene3D - 706 754 - -
Stsc241739g00016 856 Gene3D Immunoglobulins 353 421 IPR013783 -
Stsc241739g00016 856 SUPERFAMILY Ankyrin repeat 493 605 IPR036770 -
Stsc241739g00016 856 SMART ANK_2a 543 572 IPR002110 GO:0005515
Stsc241739g00016 856 ProSiteProfiles Ankyrin repeat region circular profile. 543 571 - -
Stsc241739g00016 856 ProSiteProfiles Ankyrin repeat profile. 543 575 IPR002110 GO:0005515
Stsc241739g00016 856 Gene3D - 483 610 IPR036770 -
Stsc241739g00016 856 ProSiteProfiles IQ motif profile. 691 717 IPR000048 GO:0005515
Stsc241739g00016 856 ProSiteProfiles IQ motif profile. 707 736 IPR000048 GO:0005515
Stsc241739g00016 856 Pfam IQ calmodulin-binding motif 732 751 IPR000048 GO:0005515
Stsc241739g00016 856 Pfam IQ calmodulin-binding motif 709 727 IPR000048 GO:0005515
Stsc241739g00016 856 ProSiteProfiles CG-1 DNA-binding domain profile. 26 152 IPR005559 GO:0003677
Stsc241739g00016 856 SMART CG_1_2 29 147 IPR005559 GO:0003677
Stsc241739g00016 856 Pfam CG-1 domain 32 145 IPR005559 GO:0003677
Stsc241739g00016 856 SUPERFAMILY E set domains 358 417 IPR014756 -
Stsc241739g00016 856 ProSiteProfiles IQ motif profile. 730 754 IPR000048 GO:0005515
Stsc241739g00016 856 Pfam Ankyrin repeats (3 copies) 495 572 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241739g00016 Stsc-Chr241739 86375 92581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241739g00016 29 839 CAMTA Transcription Factor Family AT3G16940 52.370 0.0 843
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Stsc241739g00016 CG-1 2.5e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241739g00016 K21596 - gmx:100793970 1254.2