Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241739g00010 ATGGGAAGAGCTCCATGCTGTGAGAAAGTGGGGTTGAAGCGAGGAAGATGGACAGCTGAAGAAGATAGCATATTGACCCAATACATAGAAGAACATGGGGAGGGTTCATGGAGGTCATTGCCAAAGAATGCTGGCCTCTTAAGGTGTGGTAAGAGTTGCAGACTTAGATGGATAAACTACCTCAGATCAGATGTCAAGAGAGGCAACATCACTCCCCAAGAGGAAGAGATCATTGTCAAGTTGCATGCTGTTCTTGGTAATAGGTGGTCAGTGATAGCAGGCCATTTACCAGGAAGAACAGATAATGAGATAAAGAACTATTGGAACTCTCATCTGAGGAGGAAGATTTATTGCTTTGTGAAATCTTTGAATGATTCCTCCTTTCCTCCTACCATTGACATTGCTGCAATAAACGCTTCCTTTTCCAAGAGAAGAGCACCTACTCGATCTACTACACGTAAGAAATTAGAATTAGGGAACACAAAAGAGGTGATAATGCTTCAACAAACTATTCAAAAGAATAACTATGCCTATGATGAAGCTTTTAATTTGAAACCGGGTTCTGAATGCTTAGGTTTGGAAGCTTACTGTGAGAATAATGATGAGGAGTTGAGAGCATATGAATGGTTAGATGATGAAATTATGAAACTTAGTTACATGTTTGAGAGTGGTATGCTTGTAAACTATGGTGATAATAATAATGATGAAGAGGTGAACAAGAGTGTTAGTTATTGGAACACGACTACTACTACACCTCCAAGCTCTTCTTCTTCTTCTGTGTATGATTGGCATCATCATCATCATCATGTGCATTTGGCAGGTGGCAGTGTTCATCAATGGGACCTTTGTGAACAAGACCAGATCCCTAGTACCTTATGGGGAAGGTAA 888 0.4043 MGRAPCCEKVGLKRGRWTAEEDSILTQYIEEHGEGSWRSLPKNAGLLRCGKSCRLRWINYLRSDVKRGNITPQEEEIIVKLHAVLGNRWSVIAGHLPGRTDNEIKNYWNSHLRRKIYCFVKSLNDSSFPPTIDIAAINASFSKRRAPTRSTTRKKLELGNTKEVIMLQQTIQKNNYAYDEAFNLKPGSECLGLEAYCENNDEELRAYEWLDDEIMKLSYMFESGMLVNYGDNNNDEEVNKSVSYWNTTTTTPPSSSSSSVYDWHHHHHHVHLAGGSVHQWDLCEQDQIPSTLWGR 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241739g00010 295 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Stsc241739g00010 295 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 194 - -
Stsc241739g00010 295 FunFam Myb transcription factor 71 116 - -
Stsc241739g00010 295 CDD SANT 16 61 IPR001005 -
Stsc241739g00010 295 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Stsc241739g00010 295 FunFam Myb transcription factor 11 67 - -
Stsc241739g00010 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Stsc241739g00010 295 CDD SANT 71 112 IPR001005 -
Stsc241739g00010 295 Gene3D - 11 67 - -
Stsc241739g00010 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Stsc241739g00010 295 SMART sant 66 114 IPR001005 -
Stsc241739g00010 295 SMART sant 13 63 IPR001005 -
Stsc241739g00010 295 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Stsc241739g00010 295 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Stsc241739g00010 295 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Stsc241739g00010 295 Gene3D - 71 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241739g00010 Stsc-Chr241739 56378 57628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241739g00010 1 217 MYB Transcription Factor Family AT5G49330 55.760 1.18e-73 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc241739g00010 Myb_DNA-binding 8.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241739g00010 K09422 - gmx:100795019 329.717