Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241739g00003 ATGAATCTCACCAACGGAAGGGGATCCATGTCCACGGTTACTTCAGGTCCCGCTATGAAATCCGCCGACGCCGTCTCCGACCAGTTTCCGGCGGGTCTGCGGGTCCTTGTTGTGGACGATGATCCCACGTGTCTCATGATTCTTGAGAAGATGCTCCGAACTTGTCTTTACGAAGTTACCAAATGCAACAGGGCAGAGATAGCACTCTCACTTCTGCGAGAGAATAAAAATGGGTTTGACATTGTTATTAGTGATGTTCATATGCCAGACATGGATGGATTTAAACTGTTAGAACACATTGGCTTGGAAATGGACCTCCCTGTTATCATGATGTCTGCAGATGATGGTAAAAATGTTGTTATGAAGGGTGTAACACATGGTGCATGTGATTACTTAATTAAACCTGTTCGCATAGAGGCTTTGAAGAACATATGGCAGCACGTTGTTCGCAAGAGAAAGAATGAATGGAGAGATACTGAGCAGTCAGGTAGTGCTGAAGAAGGAGACCGACAGCAGAAGGCATCGGATGACGCCGATTACTCATCATCGGCAAATGAAAGCAACTGGAGAAACGCAAAGAAGAGGAGGGATGAGGAAGAGGAAGCAGAGGAAAGAGATGACACTTCAACCTTAAAGAAGCCGAGAGTTGTTTGGTCTGTCGAGCTGCATCAACAGTTTGTAGCGGCTGTAGATCAACTGGGAATTGACAAGGCTGTACCCAAAAAGATTCTTGAATTGATGAATGTTCCTGGACTCACCAGAGAAAATGTAGCCAGCCACCTTCAGAAATACCGGTTGTACCTCCGAAGGCTGAGTGGGGTTTCTCAGCATCAGAGTAACATGAACAGTTCCTTCATGAATCCTCAAGATGCAACATTTGGGACAATTTCTTCGATTAATGGAATTGATCTTCAAACTCTTGCAGCTGCTGGCCAACTCCCAGCACAAAGTCTAGCCACACTACAAGCAGCAGGACTTGGTAGGTCAACTGCAAAACCGGGCTTACCCATGCCCATCATGGATCAAAGAAACCTTTTTAGTTTTGAAAACCCAAGGTTAAGATTCAGTGAAGGGCAACAACAACAACAACAACATTTGAATAATAATAAACCAGTGAATTTACTTCACGGAATCCCTACAAATATGGAACCAAAGCAGCTTGCCAGTTTGCACCAATCTTCCCAACCCCTCGGCAACTTGAATGTGCGGGNNNNNNNNNNGCACACAGAGCAATCCCTTGTTAATGCAGATGGTGCAACCCCAACCTAG 1269 0.4507 MNLTNGRGSMSTVTSGPAMKSADAVSDQFPAGLRVLVVDDDPTCLMILEKMLRTCLYEVTKCNRAEIALSLLRENKNGFDIVISDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKNVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWRDTEQSGSAEEGDRQQKASDDADYSSSANESNWRNAKKRRDEEEEAEERDDTSTLKKPRVVWSVELHQQFVAAVDQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQHQSNMNSSFMNPQDATFGTISSINGIDLQTLAAAGQLPAQSLATLQAAGLGRSTAKPGLPMPIMDQRNLFSFENPRLRFSEGQQQQQQHLNNNKPVNLLHGIPTNMEPKQLASLHQSSQPLGNLNVRXXXXHTEQSLVNADGATPT 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241739g00003 422 SUPERFAMILY CheY-like 32 157 IPR011006 -
Stsc241739g00003 422 MobiDBLite consensus disorder prediction 156 176 - -
Stsc241739g00003 422 MobiDBLite consensus disorder prediction 156 208 - -
Stsc241739g00003 422 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 212 269 IPR017930 -
Stsc241739g00003 422 MobiDBLite consensus disorder prediction 385 422 - -
Stsc241739g00003 422 Pfam Response regulator receiver domain 35 143 IPR001789 GO:0000160
Stsc241739g00003 422 NCBIfam myb-like DNA-binding domain, SHAQKYF class 213 266 IPR006447 GO:0003677
Stsc241739g00003 422 PIRSF RR_ARR_type-B 11 420 IPR017053 GO:0003677|GO:0003700|GO:0009736
Stsc241739g00003 422 FunFam Two-component response regulator 209 272 - -
Stsc241739g00003 422 Gene3D - 210 272 - -
Stsc241739g00003 422 ProSiteProfiles Response regulatory domain profile. 34 149 IPR001789 GO:0000160
Stsc241739g00003 422 MobiDBLite consensus disorder prediction 189 208 - -
Stsc241739g00003 422 CDD REC_typeB_ARR-like 35 149 - -
Stsc241739g00003 422 SMART REC_2 33 145 IPR001789 GO:0000160
Stsc241739g00003 422 SUPERFAMILY Homeodomain-like 210 270 IPR009057 -
Stsc241739g00003 422 MobiDBLite consensus disorder prediction 355 375 - -
Stsc241739g00003 422 MobiDBLite consensus disorder prediction 355 422 - -
Stsc241739g00003 422 Gene3D - 33 172 - -
Stsc241739g00003 422 FunFam Two-component response regulator 33 170 - -
Stsc241739g00003 422 PANTHER TWO-COMPONENT RESPONSE REGULATOR 33 342 IPR045279 GO:0009736
Stsc241739g00003 422 Pfam Myb-like DNA-binding domain 215 265 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241739g00003 Stsc-Chr241739 17717 21789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241739g00003 67 399 Response Regulator Gene Family AT3G16857 65.449 6.35e-154 447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Stsc241739g00003 Response_reg 4.6e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241739g00003 - K14491 gmx:100814930 707.983