Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241738g00012 ATGGCGCAGCAACCAAGCTCAACGGGTCAGCTTATGGGTTCAGAGATACATGGCTTCCATACATTGCAAGGTGGGAGTATTATATTGTTTGACCGCAAGGTGCTTAGGAACTTTCGAAAAGATGGGTACAACTGGAAGAAGAAAAATGATGGGAAAACTGTTAAAGAAGCACATGAGCACTTAAAAGTTGGAAATGAAGAAAGGATCCATGTATATTATGCACATGGCCAAGATAACCCGGGACTTGTTCGTAGATGTTATTGGTTGCTTGATAAGAAGCTAGAGCACATAGTCCTTGTTCATTATCGTGAAACACAAGAGTCACCAGCTACTTCTGTCACACCTGTAAATTCTCATTCTAGTTCTGCCTCTGACCAACCTACACCATGGATTTTATCCGAAGAATTAGACTCCGGGACCAACGCTGCTTATGCCAGTGGACTTAATGACAATTTGACGGTTGAGAGTCATGAAATGAAGCTTCATGAGCTTAATACACTCGAATGGGATGACCTCGTGGTTTCAAACAACAACACCTCTACTATAACCACTAGTGGAAATGTTCAATCCTTGAATCAACAAAATCAAAGTTTTCTGAAAGGGAGCTCTGGCAATGTAGCAACTAATTTGGTTCCTGAAACTCCTCCTTTCAGTAAGTTAGCTCAGCCTATTGCTGGGAGCAATAGTGTTCCTTACAATATTCCAGAAAATCCAAGCTTGCAAAGTCAGGACAGCTTTGGAACGTGGATAAACAATATGATATCTGATCCACCACCTTGTTCTGTAGATGAGTCAGCAGCTCTTGAATCCTCAATTTCTCCATTGGTTCAGGGACAATATTCATCAGTGGTGGCTTGTAATCAGCTTTCATCTTTGCCTGAACAAGTATTTACCATCACTGATGTGTCCCCGATGTGGGCTTCTTCCACCGAGAAAACAAAGATCCTTGTAACCGGTTTATTTCGTAATGACTATCAACACCTTGCAAAGTCCAATCTATATTGTGTCTGCAGTGATGCAAGTATTCCTGTAGAGACTGTTCAGCCCGGAGTCTACCGGTGCTGGGTATCGCCTCATTCTCCTGGATTTGTGAATCTCTACTTGAGCTTTGATGGCTACAAACCAATTAGTCAAGTTGTTAATTTTGAGTATCGTACACCACTGTTGCACGATCCTACTGCTTTTATGGAACAGAAATACGACTGGGAAGAATTTCGGCATCAGATTAGGCTTACTAATTTGCTCTTTGATACAAAAAAGAGCCTTGATATTTTCTCCAGTAAAGTGTCACCTAAGGCCCTGAAAGAGGCTAAGAAGTTTGCCTTTAACACATCATTTATTTCTAAAAGCTGGCAATACCTGATGAAGTCAACTGAGGAAAATACAATTCCGTTTCCACAAGCAAAAGATGACTTGTTTCAAATTGCTTTGAAGAACAGATTAAAGGAATGGCTTTTGGAACGAATCAGCTTAGGCATTAAGACTACTGAACTTGATAAGCAAGGGCAAGGAGTAATCCATTTGTGTGCAATTCTGGGATATACTTGGGCTGTTTCTTTATTTTCATGGTCTGGCTTGTCTCTTGATTTCCGTGACAAATTCGGATGGACAGCTCTACATTGGGCAGCATATTATGGAAGGGAGAAAATGGTTGGAACTCTCTTGTCTTTTGGGGCGAAGCCAAATTTGGTTACAGATCCAACTCCCCAAAATCCTGGTGGATGTACTGCTGCTGATCTTGCTTGTATTAAGGGCTATGATGGTTTAGCGGCTTATCTTTCAGAAAAGTCTCTGGTCGAGCAAGTCAACGATATGACCCTAGCCGGAAATATCAGTGGCCCACTGGAAACCACTACAGTGGATATAGGAAACACAGAGAACCTGACTGAGGACCAACTGTACCTCAAGGAGACACTAGCATCTTACCGCACAGCAGCTGAGGCAGCAGCTGCTTTCAGGGGATTCCAAATGAGGAAGCAATATCGCAAAATTATTTGGTCAGTCGGAGTGCTTGAGAAAGTAATCCTGCGTTGGCGTTTGAAGAGAAAAGGTTTCCGTGGTCTCCAGGTCAATCCTGACGAAGAAATGAAAGATGAGAAGCAGGAAAGCGACATAGAGGAGGACTTCTTTAGAACTAGTAGGAGACAAGCCGAAGAACGTGTTGAGAGGTCTGTCGTCCGCGTGCAAGCCATGTTCCGTTCTAAGAAAGCACAAGAAGAATACAGAAGGATGAAGTTGGCACATAATCAAGCACAGCTGGAGCTGGAATTTGAAGAACTCCTGATTTGTGGAGATGACATGATAACGGAGATGTAG 2316 0.4262 MAQQPSSTGQLMGSEIHGFHTLQGGSIILFDRKVLRNFRKDGYNWKKKNDGKTVKEAHEHLKVGNEERIHVYYAHGQDNPGLVRRCYWLLDKKLEHIVLVHYRETQESPATSVTPVNSHSSSASDQPTPWILSEELDSGTNAAYASGLNDNLTVESHEMKLHELNTLEWDDLVVSNNNTSTITTSGNVQSLNQQNQSFLKGSSGNVATNLVPETPPFSKLAQPIAGSNSVPYNIPENPSLQSQDSFGTWINNMISDPPPCSVDESAALESSISPLVQGQYSSVVACNQLSSLPEQVFTITDVSPMWASSTEKTKILVTGLFRNDYQHLAKSNLYCVCSDASIPVETVQPGVYRCWVSPHSPGFVNLYLSFDGYKPISQVVNFEYRTPLLHDPTAFMEQKYDWEEFRHQIRLTNLLFDTKKSLDIFSSKVSPKALKEAKKFAFNTSFISKSWQYLMKSTEENTIPFPQAKDDLFQIALKNRLKEWLLERISLGIKTTELDKQGQGVIHLCAILGYTWAVSLFSWSGLSLDFRDKFGWTALHWAAYYGREKMVGTLLSFGAKPNLVTDPTPQNPGGCTAADLACIKGYDGLAAYLSEKSLVEQVNDMTLAGNISGPLETTTVDIGNTENLTEDQLYLKETLASYRTAAEAAAAFRGFQMRKQYRKIIWSVGVLEKVILRWRLKRKGFRGLQVNPDEEMKDEKQESDIEEDFFRTSRRQAEERVERSVVRVQAMFRSKKAQEEYRRMKLAHNQAQLELEFEELLICGDDMITEM 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241738g00012 771 Pfam CG-1 domain 23 104 IPR005559 GO:0003677
Stsc241738g00012 771 Pfam Ankyrin repeats (3 copies) 479 563 IPR002110 GO:0005515
Stsc241738g00012 771 ProSiteProfiles IQ motif profile. 722 750 IPR000048 GO:0005515
Stsc241738g00012 771 Gene3D - 465 604 IPR036770 -
Stsc241738g00012 771 Gene3D Immunoglobulins 293 387 IPR013783 -
Stsc241738g00012 771 ProSiteProfiles Ankyrin repeat profile. 534 566 IPR002110 GO:0005515
Stsc241738g00012 771 SMART CG_1_2 12 106 IPR005559 GO:0003677
Stsc241738g00012 771 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 650 751 - -
Stsc241738g00012 771 FunFam calmodulin-binding transcription activator 5 464 604 - -
Stsc241738g00012 771 SMART ANK_2a 534 563 IPR002110 GO:0005515
Stsc241738g00012 771 SMART ANK_2a 573 604 IPR002110 GO:0005515
Stsc241738g00012 771 MobiDBLite consensus disorder prediction 108 129 - -
Stsc241738g00012 771 ProSiteProfiles IQ motif profile. 641 665 IPR000048 GO:0005515
Stsc241738g00012 771 SUPERFAMILY E set domains 298 385 IPR014756 -
Stsc241738g00012 771 Coils Coil 734 754 - -
Stsc241738g00012 771 ProSiteProfiles Ankyrin repeat region circular profile. 534 562 - -
Stsc241738g00012 771 ProSiteProfiles CG-1 DNA-binding domain profile. 1 111 IPR005559 GO:0003677
Stsc241738g00012 771 SUPERFAMILY Ankyrin repeat 472 596 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241738g00012 Stsc-Chr241738 74732 81695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241738g00012 25 754 CAMTA Transcription Factor Family AT3G16940 46.520 0.0 682
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241738g00012 K21596 - gmx:100819198 926.391