Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241738g00005 ATGAGTACATCAGAAAACCCTAGCTTTCAACATCATAATCCCTATTCAAAGGACAAAGTTTACTCTCCCTCTCCATCCTCTTCTACAACACCAAGGCTCTTTGGTTTTCCCTTAACCACTACCTCATCCTCAAGCTCCGAATCCATGGTTAGCAAGAGGTTCAAATGCGATTTTTGCTACCGCGAATTCACGAATTCGCAGGCATTAGGTGGCCACCAAAACGCTCACAAGAAAGAACGTCAAAGGGCCACCCTAGCACGCTTTAGCCAACACTCTATCCCCATTGGCTTCTTTCCCTCGTCGTCAGGATCGTTCATTCATTCGCATGAAAGCGGGACCCTACATCCTGTGATTCCTGCGAAGAAACTTGATCATGATGACGAAAAGGAAGATTCATTAATTCCCGTTGTTGCGACGATGAGAACAAATGAGGAAGGTGATGGAGCAAGACAAAAAGTAGAACCTTTCTTCTCAGAACAAGTACATAGGAATAAGAGTGATGATGTTGATCTTAACTTGAGGCTATAG 528 0.4413 MSTSENPSFQHHNPYSKDKVYSPSPSSSTTPRLFGFPLTTTSSSSSESMVSKRFKCDFCYREFTNSQALGGHQNAHKKERQRATLARFSQHSIPIGFFPSSSGSFIHSHESGTLHPVIPAKKLDHDDEKEDSLIPVVATMRTNEEGDGARQKVEPFFSEQVHRNKSDDVDLNLRL 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241738g00005 175 ProSiteProfiles Zinc finger C2H2 type domain profile. 54 81 IPR013087 -
Stsc241738g00005 175 MobiDBLite consensus disorder prediction 1 44 - -
Stsc241738g00005 175 SUPERFAMILY beta-beta-alpha zinc fingers 52 81 IPR036236 -
Stsc241738g00005 175 Gene3D Classic Zinc Finger 34 93 - -
Stsc241738g00005 175 PANTHER ZINC FINGER PROTEIN 5 25 102 IPR044299 GO:0010090
Stsc241738g00005 175 ProSitePatterns Zinc finger C2H2 type domain signature. 56 76 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241738g00005 Stsc-Chr241738 30322 30849 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241738g00005 32 98 C2H2 Transcription Factor Family AT5G06650 46.250 1.24e-13 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc241738g00005 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241738g00005 - - ahf:112740291 181.415