Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241738g00004 ATGTCAGAAGGAACGAGTCTGGTGCTGGAATCGTCCGAGAATTGCACGGATTTGTCTCAGGATGAAATTGGCACTATTGAGGAAACGCCAGAGGAGACAATTTTGTCGAGACAAACTTCTGTCAACCTTGTTCCTTTTATAGGTCAGAGGTTTGTTTCTCAAGAAGCTGCTTATGAATTCTATTGCAGTTTTGCTAAACAGTGTGGTTTTTCTATTCGGCGACACCGCACCCGAGGGAAGGATGGTGTTGGCCGCGGAGTCACAAGGAGGGATTTTACTTGCCATCGAGGTGGATACCCCCAGGTCAAACCTTCTGATGATGCGAAGATGCAAAGGAACCGTAAATCATCTCGTTGTGGTTGCCAAGCATACTTGCGTATTGTAAAAAAGTCAGATTTTGATGTCCCTGAGTGGCGTGTTACCGGTTTTAGCAATGTCCACAATCATGAGTTGTTAAAATCCAATGAGGTGCGTCTTCTTCCAGCGTACTGCACAATATCTCCCGATGACAAGAGCCGCATATGCATGTTTGCTAAGGCAGGAATGTCAGTGAGGCAAATGTTGAGATTGATGGAACTAGAGAAAGGCATTAAAGTTGGTTGCCTTCCTTTTACAGAAATGGATGTGAGAAATTTGTTGCAGTCTTTCAGAAATGTTGAGAGAGACAATGATGCCATTGATCTAATTGCTATGTGCAAGAGATTAAAAGATGAAAATCAAAACTTCAAGTATGAATTCAAGTTAGACAGTAGTAACAGGCTGGAGCACATTGCGTGGTCTTATGGCTCATCTGTTCAGTCGTATGTGGCATTTGGAGATGCTGTGGTTTTTGACACCACCCACCGAGTAGATGCCTATGACATGCTGTTGGGAATTTGGCTTGGAGTGGACAATCATGGGATGACTTGTTTCTTTGGTTGCACACTTTTACGTGATGAAAATATGCAGTCTTTTTCGTGGGCTTTAAAGGCATTCATGGGCTTCATGAAAGGAAGAGCTCCGCAATCAATATTAACTGATCATAACATGTGGCTGAAAGAAGCTATTGCTGTTGAAATGCCTGAAACAAAACATGCCTTTTGTATATGGCATATTCTTTCGAAGTTGTCAGACTGGTTTTCTGTTCTACTTGGATCTCATTATGACGAATGGAAAGCTGACTTCCTCCAGCTCTACAATTTGGAACTGGTGGAAGATTTCGAAGAAGGGTGGAGGCAAATGGTTGATAAATATCAACTCCACGCAAACAAACATATTATTAGCCTACATTCATTAAGGATGTTTTGGGCTCTACCATTCTTGAGGCGTTACTTCTTTGCAGGATTGACCAGCACAAGTCAATCTGAGTCCATTAATGCTTTCATCCAACGGTTCTTGAGTGCTCAATCTCAATTGGACCACTTTGTAGAGCAAGTGGCAGATATTGTTGATTTTAACGACCGCGCTGGATTGAAGCAAAAGATACATAGGAAAGCGCAGAAAGTGTGCCTCAAGACGGGCTCGCCTATCGAATCGCATGCTGCCACCGTCCTTACTCCTTATGCCTTAAGTAAACTCCAGGATGAGCTAGTTTTGGCGCCGCAGTATGCATCCTTTCTGGTGGTTGAAGGTTGCTTCCAGGTCAGACACCACACTCAGACAGACGGAGGGTGCAAAGTATTTTGGGTTCCTTGTCAAGAGCACATTACCTGCAGCTGTCACCTGTTTGAGTTTTCAGGCACCTTATGCAGACATGTTCTCCGTGTCATGTCAACAAATAACTGTTTTCACATCCCCGACCAATACCTACCCACCCGTTGGAGAGGCAGTGGTTTGTCTTNNNNNNNNNNAAAGGATTCAATTTTTGGAATCCATGGTTTCAACATTTATAATGGAATCCATTGA 1884 0.4315 MSEGTSLVLESSENCTDLSQDEIGTIEETPEETILSRQTSVNLVPFIGQRFVSQEAAYEFYCSFAKQCGFSIRRHRTRGKDGVGRGVTRRDFTCHRGGYPQVKPSDDAKMQRNRKSSRCGCQAYLRIVKKSDFDVPEWRVTGFSNVHNHELLKSNEVRLLPAYCTISPDDKSRICMFAKAGMSVRQMLRLMELEKGIKVGCLPFTEMDVRNLLQSFRNVERDNDAIDLIAMCKRLKDENQNFKYEFKLDSSNRLEHIAWSYGSSVQSYVAFGDAVVFDTTHRVDAYDMLLGIWLGVDNHGMTCFFGCTLLRDENMQSFSWALKAFMGFMKGRAPQSILTDHNMWLKEAIAVEMPETKHAFCIWHILSKLSDWFSVLLGSHYDEWKADFLQLYNLELVEDFEEGWRQMVDKYQLHANKHIISLHSLRMFWALPFLRRYFFAGLTSTSQSESINAFIQRFLSAQSQLDHFVEQVADIVDFNDRAGLKQKIHRKAQKVCLKTGSPIESHAATVLTPYALSKLQDELVLAPQYASFLVVEGCFQVRHHTQTDGGCKVFWVPCQEHITCSCHLFEFSGTLCRHVLRVMSTNNCFHIPDQYLPTRWRGSGLSXXXXKDSIFGIHGFNIYNGIH 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241738g00004 627 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 39 601 IPR031052 GO:0006355
Stsc241738g00004 627 Pfam FAR1 DNA-binding domain 59 152 IPR004330 -
Stsc241738g00004 627 ProSiteProfiles Zinc finger SWIM-type profile. 554 587 IPR007527 GO:0008270
Stsc241738g00004 627 Pfam SWIM zinc finger 559 584 IPR007527 GO:0008270
Stsc241738g00004 627 SMART 26again6 562 589 IPR006564 GO:0008270
Stsc241738g00004 627 Pfam MULE transposase domain 275 367 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241738g00004 Stsc-Chr241738 16056 19004 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Stsc241738g00004 MULE 1.3e-20 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241738g00004 - - gmx:100778434 1117.83