Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241738g00001 ATGTCGCTGAGGCCGAGTGAGAGGACGGAGGTTCGACGGAACCGGTACAAGGTGGCGGTGGATGCGGATGAGGGTCGCCGGAGGAGGGAGGACAACATGGTGGAGATCCGGAAGAGTAAGCGCGAGGAGAGCCTCCTCAAGAAGCGCCGCGAGGGCCTCCAAGCTCAGCAGCTCCTCCAGCAGGAGCTGCAACCGCAGCAATTCCCAACCAATCTTCTTCAAGCATCATCCATCATCGAGAAAAAGTTGGAGAGTCTTCCTGCTATGGTCGCTGGGGTGATGTCCAATGATAACAGCCAGCAACTTGATGCTACCACACAATTTAGGAAGCTGCTCTCAATAGAGCGCAGCCCACCGATTGAGGAAGTTATCCAAGCTGGTGTTGTTCCACGGTTTGTTGAGTTTCTCCATAGGGATGATTTCCCGCAACTTCAGTTTGAGGCTGCATGGGCTCTCACAAACATAGCGTCTGGAACTTCTGAGAACACTAAGGTGGTAATTGATCATGGGGCAGTCCCAATCTTTGTGAAGTTACTTAGTTCTCCAAGTGATGATGTTCGAGAGCAGGCTGTTTGGGCTTTGGGAAATGTCGCTGGTGACTCTCCTAGGTGCCGTGATCTTGTTCTCGGCCATGGTGCTCTGATCCCACTATTAGCCCAGCTGAATGAGCATGCTAAACTTTCAATGCTGAGAAATGCCACATGGACTCTGTCAAACTTCTGCAGGGGGAAGCCACAGCCTCCATTTGAACACGTGAAGCCAGCACTTCCGACTCTTGAGCGGTTGGTCTTCTCAAATGATGAAGAGGTTCTGACAGATGCATGCTGGGCACTTTCCTATCTTTCTGATGGAACAAATGACAAAATCCAAGCAGTTATTGAGGCAGGTGTATGCAGCAGACTGGTGCAGCTTCTTTTGCACCCATCTCCATCGGTGCTGATTCCTGCTCTTCGTACTGTGGGAAATATTGTGACAGGAGACGACATTCAAACTCAGGCTATCATCAATCATGGTGCACTCCCATGCCTTATGAACCTGTTGACGCATAATCACAAAAAGAGCATCAAGAAAGAAGCTTGCTGGACTATTTCAAATGTTACAGCTGGAAATAGAGATCAAATACAGGCTGTTATTGAAGCTGGTCTGATTGCTCCCCTTGTCAATCTTCTTCAAAATGCTGAGTTTGACATTAAAAAAGAAGCTGCATGGGCAATCTCTAATGCTACATCTGGTGGCAGTCATGAGCAGATCAAGTATTTGGTTAGCCAAGGTTCCATTAAGCCTCTGTGTGATCTGCTTGTTTGTCCCGACCCAAGAATCGTCACCGTCTGTTTAGAAGGCCTGGAGAATATTCTAAAGATTGGGGAATCCGAGAAGACAATGGGTAACAGTGGAGATGTTAACTTGTATGCTCAGATGATTGATGATGCTGAGGGATTGGAGAAAATCGAAAACCTTCAGAGTCATGACAATAATGAAATATACGAGAAGGCTGTTAAAATTCTTGAAACATACTGGTTGGAGGATGAAGACGAGACACTACCTCCAGGCGACGTTGCTCAACCTGGTTTCAATTTTGGTGGCAATGAGGTTCCAGTCCCATCTGGCGGATTCAACTTTAGTTGA 1626 0.4766 MSLRPSERTEVRRNRYKVAVDADEGRRRREDNMVEIRKSKREESLLKKRREGLQAQQLLQQELQPQQFPTNLLQASSIIEKKLESLPAMVAGVMSNDNSQQLDATTQFRKLLSIERSPPIEEVIQAGVVPRFVEFLHRDDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLGHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEHVKPALPTLERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCSRLVQLLLHPSPSVLIPALRTVGNIVTGDDIQTQAIINHGALPCLMNLLTHNHKKSIKKEACWTISNVTAGNRDQIQAVIEAGLIAPLVNLLQNAEFDIKKEAAWAISNATSGGSHEQIKYLVSQGSIKPLCDLLVCPDPRIVTVCLEGLENILKIGESEKTMGNSGDVNLYAQMIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWLEDEDETLPPGDVAQPGFNFGGNEVPVPSGGFNFS 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241738g00001 541 SMART arm_5 413 453 IPR000225 GO:0005515
Stsc241738g00001 541 SMART arm_5 285 325 IPR000225 GO:0005515
Stsc241738g00001 541 SMART arm_5 327 368 IPR000225 GO:0005515
Stsc241738g00001 541 SMART arm_5 159 199 IPR000225 GO:0005515
Stsc241738g00001 541 SMART arm_5 370 410 IPR000225 GO:0005515
Stsc241738g00001 541 SMART arm_5 244 283 IPR000225 GO:0005515
Stsc241738g00001 541 SMART arm_5 200 242 IPR000225 GO:0005515
Stsc241738g00001 541 SMART arm_5 116 157 IPR000225 GO:0005515
Stsc241738g00001 541 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 338 381 IPR000225 GO:0005515
Stsc241738g00001 541 PANTHER IMPORTIN ALPHA 12 510 - -
Stsc241738g00001 541 Pfam Armadillo/beta-catenin-like repeat 330 367 IPR000225 GO:0005515
Stsc241738g00001 541 Pfam Armadillo/beta-catenin-like repeat 117 157 IPR000225 GO:0005515
Stsc241738g00001 541 Pfam Armadillo/beta-catenin-like repeat 370 409 IPR000225 GO:0005515
Stsc241738g00001 541 Pfam Armadillo/beta-catenin-like repeat 255 282 IPR000225 GO:0005515
Stsc241738g00001 541 Pfam Armadillo/beta-catenin-like repeat 414 451 IPR000225 GO:0005515
Stsc241738g00001 541 Pfam Armadillo/beta-catenin-like repeat 201 242 IPR000225 GO:0005515
Stsc241738g00001 541 Pfam Armadillo/beta-catenin-like repeat 159 198 IPR000225 GO:0005515
Stsc241738g00001 541 Pfam Armadillo/beta-catenin-like repeat 286 324 IPR000225 GO:0005515
Stsc241738g00001 541 PIRSF Importin_alpha 2 540 IPR024931 GO:0005737|GO:0006606|GO:0061608
Stsc241738g00001 541 Gene3D - 11 50 IPR036975 GO:0006606
Stsc241738g00001 541 Pfam Atypical Arm repeat 468 514 IPR032413 -
Stsc241738g00001 541 Gene3D - 84 507 IPR011989 -
Stsc241738g00001 541 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 127 170 IPR000225 GO:0005515
Stsc241738g00001 541 Coils Coil 36 56 - -
Stsc241738g00001 541 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 381 409 IPR000225 GO:0005515
Stsc241738g00001 541 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 170 212 IPR000225 GO:0005515
Stsc241738g00001 541 SUPERFAMILY ARM repeat 12 512 IPR016024 -
Stsc241738g00001 541 ProSiteProfiles IBB domain profile. 1 58 IPR002652 GO:0006606|GO:0061608
Stsc241738g00001 541 FunFam Importin subunit alpha 84 507 - -
Stsc241738g00001 541 Pfam Importin beta binding domain 12 106 IPR002652 GO:0006606|GO:0061608
Stsc241738g00001 541 FunFam Importin subunit alpha 11 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241738g00001 Stsc-Chr241738 32 3396 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241738g00001 142 402 U-box Gene Family AT3G46510 25.191 3.95e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241738g00001 K15042 - gmx:100780020 976.081