Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241737g00007 ATGGGAAATAACAACATTATGATTAAGAGCAAGCTTAGAAAGGGTTTATGGTCACCGGAGGAAGACGAGAAGCTATTAAGGTACATGCTCACCAATGGACAAGGTTGTTGGACCGACATTGCGAGGAATGCCGGCCTCCAACGGTGCGGCAAAAGTTGCCGCCTCCGTTGGATTAACTACCTCCGGCCGGACCTCAAGCGCGGCGCTTTTTCGCCGCAAGAGGAAGATCTCATTGTTCATTTGCATTCCATTCTTGGCAACAGGTGGTCTCAGATAGCAGCACGTTTACCTGGCCGTACAGACAATGAGATAAAAAATTTCTGGAACTCAACACTCAAGAAGAGATTCAAACTCACCGTTAATAATAATAATAATAACACCCCATCACCAAACATCACCAACAATAATTGTAGTGATGACTCTTCATTTTCAGATCCTAATACTAATGGAATCATGATGATCATGCACCTCAATGAACAACAACAATATGATAATCATCTCATGGCCATGTCATCATCAATGTGCATGGATTCATCATATTCTTCATCATCAACTTCTTCATCAATCTCATCCATGCAGCAGCAGCAACAACAAGCAGCAATGGTTTTTACTGACCAATTTAATGACCCTTTTTCTATGTTGATAGATCACAATAATAATAGTAATGTGCCTCAATGCTTGATGACCCAATTTGGTGGCATGGTAGAGGAGGGGCATAATGGGAATTATGGAATAATTATGGGGCCTAACATCAATAAAATGGGGCTTGAAAGAGAGTTGTGCCTTCCTCCACTAGAAAATGACAATAGTGCCCCTGTTCTTGATGTGAAAAGGCTAAACAACCATTTCAATCATCATAGTATTCATCAGAAGGTCTCCAAAGTGGAGGAATTGTTTGGGTTTGGAAATAATAATAATAATAATTATCATCATGGGCAGCAACAAGTGGAAAACTTGAAAATTGGAGAATGGGATTTGGAGGGTCTTATGCAAGATATCTCATCTTTTCCATTTCTTGATTTCCAAGTTGAATAA 1035 0.401 MGNNNIMIKSKLRKGLWSPEEDEKLLRYMLTNGQGCWTDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEDLIVHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKRFKLTVNNNNNNTPSPNITNNNCSDDSSFSDPNTNGIMMIMHLNEQQQYDNHLMAMSSSMCMDSSYSSSSTSSSISSMQQQQQQAAMVFTDQFNDPFSMLIDHNNNSNVPQCLMTQFGGMVEEGHNGNYGIIMGPNINKMGLERELCLPPLENDNSAPVLDVKRLNNHFNHHSIHQKVSKVEELFGFGNNNNNNYHHGQQQVENLKIGEWDLEGLMQDISSFPFLDFQVE 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241737g00007 344 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Stsc241737g00007 344 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Stsc241737g00007 344 CDD SANT 69 112 IPR001005 -
Stsc241737g00007 344 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Stsc241737g00007 344 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Stsc241737g00007 344 SMART sant 66 114 IPR001005 -
Stsc241737g00007 344 SMART sant 13 63 IPR001005 -
Stsc241737g00007 344 FunFam MYB transcription factor 11 67 - -
Stsc241737g00007 344 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Stsc241737g00007 344 CDD SANT 17 61 IPR001005 -
Stsc241737g00007 344 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Stsc241737g00007 344 Gene3D - 11 67 - -
Stsc241737g00007 344 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Stsc241737g00007 344 Gene3D - 68 140 - -
Stsc241737g00007 344 PANTHER MYB DOMAIN PROTEIN 55 8 282 - -
Stsc241737g00007 344 FunFam Myb transcription factor 69 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241737g00007 Stsc-Chr241737 124985 128951 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241737g00007 2 344 MYB Transcription Factor Family AT3G08500 47.899 1.09e-86 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc241737g00007 Myb_DNA-bind_6 1.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241737g00007 K09422 - gmx:100784755 315.849