Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241736g00020 ATGTCAGAGCAGAAAACATACTCTTCTTCTGCCTTCTTATTGCTTTCTCTCTTCATCATCCTTCTCCTTTCAGTTGAGGTTATTGTTGGTGAGGATTCTTTGGAAACTGATAAACAAGTTCTTTTGGAACTGAAAGCATACCTTGATAGCAAAACATATGAAGATCATGGAGTTTATGTGTATTGGAACAGCAGCACTAGTCCATGTGAATGGCCAGGGATATGGTGCACCTCCAATAGGGTGGCCGGAATAGACCTCTCCGGCAGCGAAATCACCGGAGAGATTTTCGGCAAATTCTCAATGCTCACTGAGCTAACACACCTTGATCTCTCTCAGAACACACTCTTTGGTGACATTCCTCAAGATCTAAGGCATTGCCAGAATCTCATTCATCTCAACATCTCAAATAACATTCTTGCTGGTGAGCTGAACTTGACAGGCTTCACAACATTGCAGACTCTGGACTTGTCTGTGAATAGGCTTCATGGTGAGATTGGTGTGAAGCTTTTCGCCGGCGCCTGCGACAGCTTAGTTACTCTAAATGCCTCTGGAAACAACTTGACTGGTGGAATTGGTGGCTGGCTTGATCAGTGTCCTATGCTGCAGTACTTGGATTTGAGCACAAACAATCTAAGTGGAGGCTTGGGGAGTGGTTTTGCAAGGCTGAAGGAGTTTTCTGTTGCAGAAAATCATCTCAGTGGGAATGTTTCATCAGAGGCTTTTCCCTTGGATTGTAGCCTTGAAGAACTAGACCTTTCGCAGAATGGTTTCGTCGGCGAGGTGCCGGAGGGTGTTGCAAACTGCAAGAATCTAACAATTCTGAATCTTTCCAGCAACAATTTCACTGGTGGAATCCCAACTGAGATAGGATCAATTTCAGGCCTGAAAGGATTGTACTTGGGGAATAACAGTTTCTCAAGAGATTTACCTTGGAATCTGTTGAATCTTACCAATTTGGTTCTCTTGGATTTGAGCAGAAACTGTTTTGGTGGGGAAATTCAAGAGGTTTTTGGGGAATTCAAGCAACTGAGCTTTCTTGTGTTGCACTCAAACCACTACACTGGAGGATTGATCTCCTCAGGGATCCTTAAACTGCCGAAAATTTCGCAGATAGATCTAAGCTTCAACAACTTCTCAGGTCCATTGCCTGTTGAGATCACTCAGATGCCAAGCCTTCAATTCTTGATGCTGTCCTACAACCAGTTCAGCGGGCCAATTCCGGCCGAATTTGGAAACATGGCTAACCTTCAAGCACTAGACCTTGGCTACAACAATTTGAATGGTTCAATCCCACCAAGCCTTGGCAAAATGAGTTCCCTCTTATGGCTAATGCTGGCGGATAATTCGCTTACCGGCAAAATCCCACCGGAGTTGGGAAACTGCTCAAGCTTGTTATGGTTGAACCTTGCAAACAACAAGCTGAGTGGGAATTTGCCTCCTGAATTGTCCAAGATTGGAAAGAATGCAATGACAACATTTGAATTGAACAAAAAAAGTGATCAAATCCTTTCTGGCTCAAGTGAGTGCCTTGCAATGAGAAGATGGATGCCTGCAGATTATCCTCCATTCAGCTTTGTCTATAGCATCTTGACAAGGAAGAATTGCAGAACACTCTGGTCTAAACTCCTCACAGGAAATGGCATTTTCCCTTTTTGCGCGCCGGGCGCCTCGCTTAGCAAGCCTCAGATTTCAGGCTATGTTCAGCTGAGTGGGAACAATCTTTATGGAGAGATCCCTTCAGTGATTGGAACAATGGTGAATTTCAGCATGCTGCATTTGGGATTCAACAACTTCTCTGGAAACTTCCCTGCTGCAATGGGAAGCATGCCACTTGTGGTTCTAAACATCACCAAGAACAAATTCTCAGGTGAAATTCCAACTGAAGTTGGAAACTTGAAATGCCTTCAGAATCTTGATTTTTCTTACAACAATTTCTCAGGGGAATTTCCAACAAGTTTGAACAGTTTAGCTGAGCTTAACAAGTTCAATATCTCATACAATCCCTTAATAACAGGTTCAGTTCCATCAACTGGACAATTTTCTACATTTGATATGGATTCATATCTAGGTGACCCTCTATTAGTCCTTCCAAAGTTCATTTCCAACATCACAAATGATAAGAACACAACCTTGCACAACCATAAGAAGAAGGTATCAAAGTTGTCTGTGTTCTTGGTTTTTGTAGCTATAACTCTTGCTTTCATGGTGTTTGGCCTTCTTACAATCATAGTCTGCGCATTGGCGAAAAGACCCTCGGATGATCCTGGATACCTCTTGAGGGAGACAAAACAGTCTCATGATTCAAGCAGCACTGCATCCTCGCCGTGGTTATCGGACACAGTTAAGGTAATCCGGTTAAACAAGACGGCTTTCACACATGAAGACATCTTGAAGGCCACTGGAAACTTCTCAGAGGACAGGATCATAGGAAGAGGAGGATTCGGAACGGTTTACAAGGGAGTTTTCCAAGATGGAAGAGTTGTTGCAGTGAAGAAGCTTCAAAGAGAAGGAATTGAGGGTGAAAAGGAGTTTAGAGCAGAAATGGAGGTTCTGAGTGGTCATGGATTTGGTTGGCCTCATCCAAACCTTGTCACACTCTATGGATGGTGCTTAAATGGTTCGGAGAAGATACTAGTTTATGAGTACATAGAAGAAGTTGCAATTGATGTTGCAAAAGCACTAGTGTATTTGCACCATGAATGTTACCCTCCAATTGTTCATAGAGATGTTAAAGCAAGCAATGTGTTGCTGCAGAAAGATGGAAAAGCAAAAGTCACAGATTTTGGATTAGCAAGAGTTGTTGATGCTGGAGATAGCCATGTTAGTACAATGGTGGCTGGAACAATTGGTTATGTTGCACCAGAATATGGACAAACATGGCAGGCTACAACAAAAGGTGATGTGTATAGTTTTGGAGTGCTGGCTATGGAGTTGGCCACAGGGAGAAGAGCAGTGGATGGAGGTGAAGAGAGCTTGGTGGAGTGGGCGTGGCGTGTGGTCGGACGCGGACGGCTCGGCCGCGCCCTGCCGGTGTCGGTGATGGGGTCAGGGCTAGTTGGTGGTGCAGAAGAGATGAGTGAAGTGCTTAGAATTGGTGTGAAGTGCACTGCTGAGGCACCATATGCTAGGCCTAATATGAAGGAGGTTCTTGAGATGTTGATTGGGATATACTACTCCAGAGGCTATTCTTTAAGCCATGGAATCATTGTTTAG 3213 0.4401 MSEQKTYSSSAFLLLSLFIILLLSVEVIVGEDSLETDKQVLLELKAYLDSKTYEDHGVYVYWNSSTSPCEWPGIWCTSNRVAGIDLSGSEITGEIFGKFSMLTELTHLDLSQNTLFGDIPQDLRHCQNLIHLNISNNILAGELNLTGFTTLQTLDLSVNRLHGEIGVKLFAGACDSLVTLNASGNNLTGGIGGWLDQCPMLQYLDLSTNNLSGGLGSGFARLKEFSVAENHLSGNVSSEAFPLDCSLEELDLSQNGFVGEVPEGVANCKNLTILNLSSNNFTGGIPTEIGSISGLKGLYLGNNSFSRDLPWNLLNLTNLVLLDLSRNCFGGEIQEVFGEFKQLSFLVLHSNHYTGGLISSGILKLPKISQIDLSFNNFSGPLPVEITQMPSLQFLMLSYNQFSGPIPAEFGNMANLQALDLGYNNLNGSIPPSLGKMSSLLWLMLADNSLTGKIPPELGNCSSLLWLNLANNKLSGNLPPELSKIGKNAMTTFELNKKSDQILSGSSECLAMRRWMPADYPPFSFVYSILTRKNCRTLWSKLLTGNGIFPFCAPGASLSKPQISGYVQLSGNNLYGEIPSVIGTMVNFSMLHLGFNNFSGNFPAAMGSMPLVVLNITKNKFSGEIPTEVGNLKCLQNLDFSYNNFSGEFPTSLNSLAELNKFNISYNPLITGSVPSTGQFSTFDMDSYLGDPLLVLPKFISNITNDKNTTLHNHKKKVSKLSVFLVFVAITLAFMVFGLLTIIVCALAKRPSDDPGYLLRETKQSHDSSSTASSPWLSDTVKVIRLNKTAFTHEDILKATGNFSEDRIIGRGGFGTVYKGVFQDGRVVAVKKLQREGIEGEKEFRAEMEVLSGHGFGWPHPNLVTLYGWCLNGSEKILVYEYIEEVAIDVAKALVYLHHECYPPIVHRDVKASNVLLQKDGKAKVTDFGLARVVDAGDSHVSTMVAGTIGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRAVDGGEESLVEWAWRVVGRGRLGRALPVSVMGSGLVGGAEEMSEVLRIGVKCTAEAPYARPNMKEVLEMLIGIYYSRGYSLSHGIIV 1070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241736g00020 1070 ProSiteProfiles Protein kinase domain profile. 803 1058 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241736g00020 1070 Gene3D Ribonuclease Inhibitor 332 511 IPR032675 -
Stsc241736g00020 1070 Pfam Leucine rich repeat 150 211 IPR001611 GO:0005515
Stsc241736g00020 1070 FunFam Putative LRR receptor-like serine/threonine-protein kinase 340 501 - -
Stsc241736g00020 1070 SMART LRR_typ_2 316 339 IPR003591 -
Stsc241736g00020 1070 SMART LRR_typ_2 102 126 IPR003591 -
Stsc241736g00020 1070 SMART LRR_typ_2 413 436 IPR003591 -
Stsc241736g00020 1070 SMART LRR_typ_2 389 412 IPR003591 -
Stsc241736g00020 1070 SMART LRR_typ_2 148 172 IPR003591 -
Stsc241736g00020 1070 SMART LRR_typ_2 437 461 IPR003591 -
Stsc241736g00020 1070 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 864 1060 - -
Stsc241736g00020 1070 Pfam Protein kinase domain 804 990 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241736g00020 1070 PANTHER RECEPTOR-LIKE PROTEIN 55 383 1053 - -
Stsc241736g00020 1070 SUPERFAMILY L domain-like 61 311 - -
Stsc241736g00020 1070 SMART serkin_6 803 1053 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241736g00020 1070 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 237 333 - -
Stsc241736g00020 1070 Pfam Leucine rich repeat N-terminal domain 35 76 IPR013210 -
Stsc241736g00020 1070 ProSitePatterns Serine/Threonine protein kinases active-site signature. 905 917 IPR008271 GO:0004672|GO:0006468
Stsc241736g00020 1070 Gene3D Ribonuclease Inhibitor 168 234 IPR032675 -
Stsc241736g00020 1070 FunFam serine/threonine-protein kinase BRI1-like 2 763 882 - -
Stsc241736g00020 1070 Gene3D Ribonuclease Inhibitor 235 331 IPR032675 -
Stsc241736g00020 1070 Gene3D Phosphorylase Kinase; domain 1 764 877 - -
Stsc241736g00020 1070 SUPERFAMILY Protein kinase-like (PK-like) 785 1054 IPR011009 -
Stsc241736g00020 1070 Gene3D Ribonuclease Inhibitor 33 167 IPR032675 -
Stsc241736g00020 1070 Pfam Leucine Rich repeat 268 283 IPR001611 GO:0005515
Stsc241736g00020 1070 Gene3D Ribonuclease Inhibitor 534 712 IPR032675 -
Stsc241736g00020 1070 Pfam Leucine Rich Repeat 105 126 IPR001611 GO:0005515
Stsc241736g00020 1070 Pfam Leucine Rich Repeat 415 436 IPR001611 GO:0005515
Stsc241736g00020 1070 Gene3D Transferase(Phosphotransferase) domain 1 878 1061 - -
Stsc241736g00020 1070 ProSitePatterns Protein kinases ATP-binding region signature. 809 832 IPR017441 GO:0005524
Stsc241736g00020 1070 SUPERFAMILY L domain-like 338 671 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241736g00020 Stsc-Chr241736 106938 110311 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241736g00020 60 333 Receptor kinase-like Gene Family AT1G55610 26.761 4.67e-11 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-2 Stsc241736g00020 Pkinase 4.3e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241736g00020 - - gmx:100816573 1521.91