Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241736g00009 ATGGAAGAAGAAGATCATCATGATCATGGTCATCATCATCATCAAGAACAAGAACAAGAAGAAGTTATGAAGCACGTGTGCAAGTTCTGCAACAAGAGCTTTCCCAGTGGCAGATCCTTAGGGGGTCACATGAGGTCTCACGTGACCAACAACAACAACTCTGAAGCTGAAGAGAAAGAGAAGCTTTCATCATCTGAAGCTACTGGAACAAACACTAACAACAGCAGTGGCTATGGTTTGAGGGAGAATCCAAAGAAGACATGGAGGATCATTGCTGATTCATCTAATAACAACAGTGAAGACAACAACAACAACAACAATTCTTCTTCTTTCTCTTCTTTGTTGCTGTGTGACAAGCTTTGCAAAGAGTGTGGAAAAGGGTTCAGTTCTTGGAAGGCCTTGTTTGGCCACATGAAACGCCATTCTCATCATCACTCCTCTTCTGCTTCTGCTTCTGCTGCCTCTGATCAAGATTCTTATTGGACAACCAAGAAGCTCTTTGTGATGGATTCTCAATCTGATAATGAAGTCACTACTGCTGCTGCTGCTGCTCCTCCAAGGAGGAGGACAAGGTCAAAGAGGAAAACAACAAGAAGGTATAATAATAATAACAATGCTACTGCTTCAACTAGTTTCACTGCCAAAACTTCTTCTTGTTCTGTTCACTCTGAGGCTGAGGTTGATATTGAGATTGAGCAGGAGCAAGAGGAGGTTGCTTTGAGCTTGATGATGCTTAGTAGGGATGTTGGTAATTGGTGGGGTACTGGTGCTGTTCTTCATTCTCTTGCTGAGTCTTCTGAGGTTGCTGAAGAAAAGGAGAATGTTGGATTTTCCATCAAGAAGGAAGCTGCTTTGGATTTTGATTTGGAATTGGAGGATGCTGGATTTGAACATGGCAAGAGTCAATCCAACAAGTACAGTTCAATCAAGAAGATTTCGAATTCGAATTCGAGTTCGGCCAAGAGGGGTAAGTTTGAGTGCACTACTTGCCAGAGGATCTTCCATTCTTATCAAGCACTTGGAGGGCACAGAGCAAGTCACAAGAAGATTAAGGGAAGCATTCAGATTGAGATTGAGACTGAACTCTCTCCTAACAACAAGATTCAGAGTGTGGAGAATGAAGAGCTTGGTTTTGATGATGATTATGATGATGAGGCTGAAGCAGCAGCAGAAGAAGAAGAAGATGATGATGATGAAGAAGATAGCAAGACAGCAAAGAAGGTAAACAAAGTTCATGAGTGTCCAATTTGCCTGAAAGTTTTTTCTTCTGGACAAGCATTGGGTGGACACAAGAGATCTCACACTGCCAAAATTGATGAACAAGAACAAGAACAGGTTCAAGAAATTAGGGTTAGGGATTTGCTTGATCTGAATCTTCCAGCAGAAGCAGCAGGTACTACTGAAATGGAAGAAAGTAATAATAGTTTCAATGCTGATTCTAATACCAGACATTGGTGGGAAGAGGCACCACTGGTGGGACTAATCTCATAG 1491 0.4199 MEEEDHHDHGHHHHQEQEQEEVMKHVCKFCNKSFPSGRSLGGHMRSHVTNNNNSEAEEKEKLSSSEATGTNTNNSSGYGLRENPKKTWRIIADSSNNNSEDNNNNNNSSSFSSLLLCDKLCKECGKGFSSWKALFGHMKRHSHHHSSSASASAASDQDSYWTTKKLFVMDSQSDNEVTTAAAAAPPRRRTRSKRKTTRRYNNNNNATASTSFTAKTSSCSVHSEAEVDIEIEQEQEEVALSLMMLSRDVGNWWGTGAVLHSLAESSEVAEEKENVGFSIKKEAALDFDLELEDAGFEHGKSQSNKYSSIKKISNSNSSSAKRGKFECTTCQRIFHSYQALGGHRASHKKIKGSIQIEIETELSPNNKIQSVENEELGFDDDYDDEAEAAAEEEEDDDDEEDSKTAKKVNKVHECPICLKVFSSGQALGGHKRSHTAKIDEQEQEQVQEIRVRDLLDLNLPAEAAGTTEMEESNNSFNADSNTRHWWEEAPLVGLIS 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241736g00009 496 ProSiteProfiles Zinc finger C2H2 type domain profile. 119 146 IPR013087 -
Stsc241736g00009 496 ProSitePatterns Zinc finger C2H2 type domain signature. 327 347 IPR013087 -
Stsc241736g00009 496 ProSitePatterns Zinc finger C2H2 type domain signature. 121 143 IPR013087 -
Stsc241736g00009 496 MobiDBLite consensus disorder prediction 65 81 - -
Stsc241736g00009 496 MobiDBLite consensus disorder prediction 1 20 - -
Stsc241736g00009 496 Gene3D Classic Zinc Finger 322 434 - -
Stsc241736g00009 496 ProSiteProfiles Zinc finger C2H2 type domain profile. 412 439 IPR013087 -
Stsc241736g00009 496 SUPERFAMILY beta-beta-alpha zinc fingers 120 347 IPR036236 -
Stsc241736g00009 496 MobiDBLite consensus disorder prediction 300 321 - -
Stsc241736g00009 496 ProSiteProfiles Zinc finger C2H2 type domain profile. 25 52 IPR013087 -
Stsc241736g00009 496 MobiDBLite consensus disorder prediction 174 211 - -
Stsc241736g00009 496 ProSitePatterns Zinc finger C2H2 type domain signature. 414 434 IPR013087 -
Stsc241736g00009 496 ProSitePatterns Zinc finger C2H2 type domain signature. 27 47 IPR013087 -
Stsc241736g00009 496 MobiDBLite consensus disorder prediction 38 85 - -
Stsc241736g00009 496 Pfam C2H2-type zinc finger 411 435 - -
Stsc241736g00009 496 Pfam C2H2-type zinc finger 121 141 - -
Stsc241736g00009 496 Pfam C2H2-type zinc finger 325 349 - -
Stsc241736g00009 496 Pfam C2H2-type zinc finger 25 47 - -
Stsc241736g00009 496 MobiDBLite consensus disorder prediction 299 321 - -
Stsc241736g00009 496 SUPERFAMILY beta-beta-alpha zinc fingers 409 437 IPR036236 -
Stsc241736g00009 496 MobiDBLite consensus disorder prediction 386 400 - -
Stsc241736g00009 496 ProSiteProfiles Zinc finger C2H2 type domain profile. 325 352 IPR013087 -
Stsc241736g00009 496 SUPERFAMILY beta-beta-alpha zinc fingers 24 50 IPR036236 -
Stsc241736g00009 496 MobiDBLite consensus disorder prediction 386 407 - -
Stsc241736g00009 496 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 17 470 - -
Stsc241736g00009 496 SMART c2h2final6 412 434 IPR013087 -
Stsc241736g00009 496 SMART c2h2final6 325 347 IPR013087 -
Stsc241736g00009 496 SMART c2h2final6 25 47 IPR013087 -
Stsc241736g00009 496 SMART c2h2final6 119 141 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241736g00009 Stsc-Chr241736 47514 49079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241736g00009 405 461 C2H2 Transcription Factor Family AT1G26610 58.730 4.11e-12 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc241736g00009 zf-C2H2_6 2.5e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241736g00009 - - aip:107619267 538.495