Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241735g00018 ATGGAGCAGCACAACCCTCAACCACCCTCTGACCCCATTTTGGAGCACACAAGCTCTCACGACAACAACAACATCATCATCGTACCGAACGAAGCAAAGATGGCGGTGGTGTCTGATTCTGGAGGCTCGGACTTCATGGCAAGACCCGAAGCTGGAGGTTCGGGGCATCACAATCATGGAGTGATAGTTATGAAGAGGGGGAGAGGGAGACCTCGAAAGTACTTTGACGCAAACGGCAGCGGCAGCGGCAGCAGGGGCAGAATCCTGTCTCCAGTGTCAGCGGCGCCGCCTCCGGGATTCTCGGTGGCGTTGGCGTCCCCTATTGAGAGCCGTGCGGTGAAGAGAGGAAGAGGAAGGCCACGTGGTTCTGGAAAACTGCAGATTCTAGCCTCCATTGGTGGATTTGTCGCAGAAACAGCAGGTGGAAGCTTCACACCTCATGTGATGATTGTTGGTACTGGAGAGGACGTGGTGAGTAGGATATTGTCTTTTTTCCAAAATGGACCTCGTGCTGTTTGCATACTTTCAGCTACTGGTTCTGTGTCCAGTGTTGTAATTCGCCAACCTGGTGTTTCTGGTGGTCTCTTGAGATATGAGGGCAGGTTTGAGATTTTATCTTTATCTGGATCATGCACCTATAGTAATGGCACTTCCAATGGATATCGCAAAGATGGCATGTTGAGTGTTTCTCTTGCTAAACCTGATGGCAGGGTTTTTGGTGGTGCCATTGAGAGTTCTTTGATTGCTGCTTGCCCTATTCAAATTGTATTGGCCACTTTCAAGCAAAACATCAGCAACCAAATCAAGAGGAGGTACTCATCTGAGCCTCCTTCTGATCGTGTCCCCTACGCCTCTGCCACCGCAGTCGCCGAGCCGGATATTCCGGATTCCTCAAGGGGTAGCCACAAAGTTCATAAGTTGTCAGAACAGAGCTTCCCATCACCACCAATAACAACAAATGGAGTTCAAGATGGTGTCACTATTGTAACAACAACAACTACTAATGGAGGATCAAATGATGTCGTGTCTGCAATTACAACAACTACAATAACTAATGGCATAGCAGAAAATGTGATTCCTACAACAACAAATGGGGTGTCACATAATGTGATTGCTGAAGATCTCAACATGCATTCTGGATCAGTTGATGATGTTATTGACCTTGACCAAACAGCCTCCCCAGAAGATGTGGATACTAATTAA 1203 0.4788 MEQHNPQPPSDPILEHTSSHDNNNIIIVPNEAKMAVVSDSGGSDFMARPEAGGSGHHNHGVIVMKRGRGRPRKYFDANGSGSGSRGRILSPVSAAPPPGFSVALASPIESRAVKRGRGRPRGSGKLQILASIGGFVAETAGGSFTPHVMIVGTGEDVVSRILSFFQNGPRAVCILSATGSVSSVVIRQPGVSGGLLRYEGRFEILSLSGSCTYSNGTSNGYRKDGMLSVSLAKPDGRVFGGAIESSLIAACPIQIVLATFKQNISNQIKRRYSSEPPSDRVPYASATAVAEPDIPDSSRGSHKVHKLSEQSFPSPPITTNGVQDGVTIVTTTTTNGGSNDVVSAITTTTITNGIAENVIPTTTNGVSHNVIAEDLNMHSGSVDDVIDLDQTASPEDVDTN 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241735g00018 400 SUPERFAMILY AF0104/ALDC/Ptd012-like 142 264 - -
Stsc241735g00018 400 CDD DUF296 145 260 IPR005175 -
Stsc241735g00018 400 SMART AT_hook_2 65 77 IPR017956 GO:0003677
Stsc241735g00018 400 SMART AT_hook_2 114 126 IPR017956 GO:0003677
Stsc241735g00018 400 Gene3D - 146 275 - -
Stsc241735g00018 400 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 41 310 IPR039605 GO:0003680
Stsc241735g00018 400 Pfam Plants and Prokaryotes Conserved (PCC) domain 146 261 IPR005175 -
Stsc241735g00018 400 ProSiteProfiles PPC domain profile profile. 141 289 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241735g00018 Stsc-Chr241735 121764 125584 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241735g00018 64 299 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 44.490 6.24e-47 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241735g00018 - - aip:107632385 543.888