Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241735g00009 ATGTCACGCCGTAACCAACCTTCTCCTTCTGATTTCTCCGGCGGAAGAGGCCGCGGCCGTGGTCGTGGTCGTGGAGGCGGACCGGCGCCATCTGTTCCCGCTGTTCGTCCGTCTGCTCCCTCGTATGCTCCCGGTGGACCGTCCATTTCATCTGCTACTCTTACTGTGCCGCCACCGGCGATCGGTTCTTCCGCCACGGTTGCCCCTCCCGCTGCTGTTGCCTCACCTTCCGCGTCGAGTTCGACGTCGCTAGAGGCTGTGACTGCCGACGTTGAGAAACTCGCATTGCAGCCGGTGGCGCCGGCGCCGTCGTCGTCGAAGGCGTTACGGCCTCCACCACGACCAGGTTTCGGAAAGGTCGGAGTGAAGATCCAGATTCGCGCGAACCACTTCCTGGTTCAAGTTGCTGATCGTGATCTTCACCACTACGATGTTGCTATAAGTCCTGAGGTAACTTCCAAGAGCATCAAAAGAATATTGGTTAACCTGCTGGTGACGAAGTATCTCAAAACGAACCTCGGGAATCGCATTCCTGCTTTTGACGGCAACAAGAACCTCTACACGGCTGGAGCGTTACCGTTTGAGTCTCAGGGCTTCGTCGTCAAGCTTTCTGATGATGATCGCAAAGGCTCTTCAGCTGCTGCTTCTGCTTCTGCTTCCGCCAGCAAAAACCGCGAACGTGAGTTCAAAATTACTATCAGATTTGCTACGAAAGTTGAACTTGGGAATCTTAACCAGTTCCTCAGGGGCCAGAATCTCGAATCTCCACAGGATACCATCCAAGCTCTGGATGTCGCCTTACGTGCATTGCCATCAGAGAAGTACAATGTTTCGGGGAGGTCATTCTTTTCGCCGGAGCTGGGGCAGAAAGGGTCGCTTGGTGGTGGTGTAGAATACTGGAGGGGTTATTATCAAAGCCTTCGCCCCACTCAGATGGGACTTTCGCTTAATATTGATGTGTCAGCAAGGTCTTATTATGAATCAATTCTTGTTACTGATTTCATTGGGAAACACTTTAATCTTGATTTGTCTAGGCGTGTGTCTGACCAAGATCGTGTTAAGATTAAGAGAGCTTTAAGAGGAGTCAAGGTCGAGGTTCGCAACAATGAGAATATTAGAGGTTACAAAGTCACTGGAGTTTCAATAGAGCCATTATATGAGTTAACGTTTAATGTTGATGATAATGCAACAAAAAAATCAGTTGTGCAATATTTCCATGAGAAGTATGGTATCCAATTGAGGTATTTGAACCTTCCTGCTATCCAAGCTGGAAGTGATGCAAAACCTGTATATTTGCCTATGGAGGTTTGTTGTATTGCTTCTGGACAGAGGTACACGAAGAAATTAACTGAGGCCCAGGTTACTCAACTTCTGAAGGCAAATTGTCAGCGTCCTCAAGACAGGGAAAACTACATCAGACAGATTGCCAGGCAGAACAACTTCAGCAATGACAAACATGCTCGGGAATTTGGAATCTCTGTAAAAGAGGAACTATCATTGATTGATGCTCGAGTCTTGCACCCTCCAATGCTAAAATACCATGAAACTGGAAAAGAAAGAATGGTTAATCCACAGATGGGTGCTTGGAATATGATAAATAAGAAAATGTATAATGGTGGGACAGTGCATAATTGGACTTGTATTAATTTTTCTAGAAGAATGAACAGAGATATGCCATCTCAGTTTTGTGCTGAATTGATTGCTATGTGTAGTAGCAAGGGGATGAATTTCAACCCGGAGCCTCTAATCCCTATAACTTCATCTCAACCTAATGCAATAGAGAGAGCTCTTGTTGACCTTCATAATAAGTGTGCACAGAAACGGCAGCAGCTTCAACTGTTGATAGTAATTTTGCCTGACTTAAAGGGGTCCTATGGAACAATAAAGCGGAAATGTGAAACAGAACTAGGAATTGTGTCTCAGTGCTGTTTGCCGAATAATGCTTGTCAAATGAAGAAGCAGTATCTTGAAAATGTTTCTCTCAAAATAAATGTCAAGGTTGGTGGTAAAAACCTGGTATTAGATGATGCAGCTCTGGGTAAAATTCCCCTTGTATCTGATATGCCAACTTTAATATTAGGAGCTGATGTAACGCATCCACAGCCCGGGGAAGACTCGGGTCCCTCTATTGCTGCAGTTGTGGGATCCATGGATTGGCCGCTTGTCACACAGTACAGAGCAATTGTTTCTGCCCAGATGCACCGACAAGAAATCATTGAGGATTTATACAAAAGAACTGAGGATCCGAACAAGGGAATCGTGCATGGAGGAATGATCAGGGAGCTGCTCGTTGCATTTTACCGCTCAACAAAACGTAAGCCTGACAGGATTATATTCTACAGAGATGGAGTCAGTGAAGGCCAGTTCAGTCAAGTTTTGCTTCATGAGATGGAAGCAATAAGAAAGGCTTGTGCCTCCTTGGAGGAGGGTTATCAGCCCCGAGTTACATTTGTTGTCGTACAGAAAAGACATCACACTCGTTTCTTCCCTGCTGATCACAGAAGTCGTGATCAAACCGACAAAAGTACTGTTGTGGACACCAAAATTTGCCACCCTTGGGAGAACGATTTCTACCTCAACAGCCATGCTGGAATTCAAGGAACCAGTCGACCTACTCATTATCATATGCTCTTTGATGAAAACAACTTCACTGCTGATGGGTTCCAGACTTTGACCAATAACTTATGTTACACGTATGCCAGATGCACTCGATCAGTATCAGTAGTTCCTCCTGCATATTATGCACATTTAGCTGCTTTTCGAGCTCGCTACTACATTGAAGGTGAAATGTCAGAAGGGGATTCTGCCAGTCGGGGCGGCGGTGGCGTCATCTTAAACTTGCCTGCAGTCAAGGACAATGTCAAGCAAGTCATGTTTTATTGCTGA 2886 0.4588 MSRRNQPSPSDFSGGRGRGRGRGRGGGPAPSVPAVRPSAPSYAPGGPSISSATLTVPPPAIGSSATVAPPAAVASPSASSSTSLEAVTADVEKLALQPVAPAPSSSKALRPPPRPGFGKVGVKIQIRANHFLVQVADRDLHHYDVAISPEVTSKSIKRILVNLLVTKYLKTNLGNRIPAFDGNKNLYTAGALPFESQGFVVKLSDDDRKGSSAAASASASASKNREREFKITIRFATKVELGNLNQFLRGQNLESPQDTIQALDVALRALPSEKYNVSGRSFFSPELGQKGSLGGGVEYWRGYYQSLRPTQMGLSLNIDVSARSYYESILVTDFIGKHFNLDLSRRVSDQDRVKIKRALRGVKVEVRNNENIRGYKVTGVSIEPLYELTFNVDDNATKKSVVQYFHEKYGIQLRYLNLPAIQAGSDAKPVYLPMEVCCIASGQRYTKKLTEAQVTQLLKANCQRPQDRENYIRQIARQNNFSNDKHAREFGISVKEELSLIDARVLHPPMLKYHETGKERMVNPQMGAWNMINKKMYNGGTVHNWTCINFSRRMNRDMPSQFCAELIAMCSSKGMNFNPEPLIPITSSQPNAIERALVDLHNKCAQKRQQLQLLIVILPDLKGSYGTIKRKCETELGIVSQCCLPNNACQMKKQYLENVSLKINVKVGGKNLVLDDAALGKIPLVSDMPTLILGADVTHPQPGEDSGPSIAAVVGSMDWPLVTQYRAIVSAQMHRQEIIEDLYKRTEDPNKGIVHGGMIRELLVAFYRSTKRKPDRIIFYRDGVSEGQFSQVLLHEMEAIRKACASLEEGYQPRVTFVVVQKRHHTRFFPADHRSRDQTDKSTVVDTKICHPWENDFYLNSHAGIQGTSRPTHYHMLFDENNFTADGFQTLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARYYIEGEMSEGDSASRGGGGVILNLPAVKDNVKQVMFYC 961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241735g00009 961 FunFam protein argonaute 10-like 681 961 - -
Stsc241735g00009 961 SMART Piwi_a_2 613 927 IPR003165 GO:0003676
Stsc241735g00009 961 FunFam Argonaute 10 505 675 - -
Stsc241735g00009 961 Gene3D - 505 676 - -
Stsc241735g00009 961 Pfam Argonaute linker 1 domain 279 326 IPR014811 -
Stsc241735g00009 961 SUPERFAMILY PAZ domain 326 481 IPR036085 GO:0005515
Stsc241735g00009 961 Pfam Piwi domain 614 926 IPR003165 GO:0003676
Stsc241735g00009 961 SMART DUF1785_2 276 328 IPR014811 -
Stsc241735g00009 961 Pfam Argonaute linker 2 domain 467 513 IPR032472 -
Stsc241735g00009 961 Pfam Mid domain of argonaute 523 602 IPR032473 -
Stsc241735g00009 961 Pfam PAZ domain 353 457 IPR003100 GO:0005515
Stsc241735g00009 961 SUPERFAMILY Ribonuclease H-like 607 927 IPR012337 -
Stsc241735g00009 961 Gene3D paz domain 329 444 - -
Stsc241735g00009 961 SMART PAZ_2_a_3 329 463 IPR003100 GO:0005515
Stsc241735g00009 961 CDD Piwi_ago-like 485 926 IPR045246 -
Stsc241735g00009 961 CDD PAZ_argonaute_like 331 437 - -
Stsc241735g00009 961 MobiDBLite consensus disorder prediction 1 80 - -
Stsc241735g00009 961 Gene3D - 682 961 IPR036397 GO:0003676
Stsc241735g00009 961 MobiDBLite consensus disorder prediction 44 60 - -
Stsc241735g00009 961 ProSiteProfiles PAZ domain profile. 329 441 IPR003100 GO:0005515
Stsc241735g00009 961 Pfam N-terminal domain of argonaute 123 267 IPR032474 -
Stsc241735g00009 961 ProSiteProfiles Piwi domain profile. 613 927 IPR003165 GO:0003676
Stsc241735g00009 961 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 104 928 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241735g00009 Stsc-Chr241735 63046 68729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241735g00009 97 961 Eukaryotic Initiation Factors Gene Family AT1G48410 56.473 0.0 1040
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241735g00009 K11593 - pop:7463340 1188.33