Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241735g00003 ATGGAATTTCAGAACCGCAGAGTACTACTCTTCATCGACAACGATGTTCCGATCTCCGCACCGCCACCGCCACCACCACCACCGTCAGCGACGGCCATGTACGGATCATCGTCATTGCAAATTCCACCTCGTCCAATCTTCACTTCAAACATAGCATACGCCTTCATCATCCTCCTCGCCACTCTCTTCTTTCTAGCCTTCATCCTCCTCTTCCTCCGCCAATTCTCCTCCTTCTCCTCCTCTTCCTCCGCCACCGGCAGCCGGTGTTCCGAACCGACGAAGAAGAAGTCGGCGCTGGTGACAGTTCCGTACAGTAGTAGCGGGAATAGGAAGAAGCATTTGCAAGAGCAGGAAGAGGAATGCGCTATATGCTTGGAAGAGCTTCGCGAGGGTGAAACCGTAAAAATGATACCTCACTGTAAGCACGTGTTCCACCCTAACTGCATTGACACGTGGCTCCTCACTCACGTGACGTGCCCCGTGTGCAGGTGCTCCAAGGTTTGTGAAGAAGAAGAGGATGAAGAAGAGAAAGAGGGAAAAACAAGAATAAGAAGAGAGGTAGTTGAAATTCGGTTACAAGAGTCTGAAACTGAAAGAGCAATGAGTAGCGATGAGAGAAGAGAAGCAATTCAAATTCTTGGTGGAATCAGGAGATCACTCGGCTTCTGA 669 0.5007 MEFQNRRVLLFIDNDVPISAPPPPPPPPSATAMYGSSSLQIPPRPIFTSNIAYAFIILLATLFFLAFILLFLRQFSSFSSSSSATGSRCSEPTKKKSALVTVPYSSSGNRKKHLQEQEEECAICLEELREGETVKMIPHCKHVFHPNCIDTWLLTHVTCPVCRCSKVCEEEEDEEEKEGKTRIRREVVEIRLQESETERAMSSDERREAIQILGGIRRSLGF 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241735g00003 222 Pfam Ring finger domain 120 163 IPR001841 -
Stsc241735g00003 222 CDD RING-H2_PA-TM-RING 120 163 - -
Stsc241735g00003 222 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 169 IPR013083 -
Stsc241735g00003 222 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 40 180 - -
Stsc241735g00003 222 ProSiteProfiles Zinc finger RING-type profile. 121 163 IPR001841 -
Stsc241735g00003 222 SMART ring_2 121 162 IPR001841 -
Stsc241735g00003 222 SUPERFAMILY RING/U-box 113 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241735g00003 Stsc-Chr241735 19905 20573 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241735g00003 8 181 Rapid Response to Elicitors AT3G05200 33.333 1.05e-25 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241735g00003 - - aip:107634124 241.506