Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241735g00002 ATGTCATTTAACAGCGATATTGAATTTAATGCAATTGAACAAACTGCTGCTAGCAGTTCATATGTGGTCCCAACTGTGGATTCTGAACGGTCTGATTCTAATACCAGAAGAAATAATGGACTTGAGATGATGGGATGCCAGAATTGTTTGCAGGAAACGACATCTGAGAATCCAGATCAACACGACCCTACTGGTCATGTAGAAGGACCTCAGTTACAGAGTTTACAATTTGAACCAGTAAATCATCTATCATCCAGTGTGGCTGTTGACAGAAGAGATAGCACTGGGCAAATTGCTGACGTGAACCTTGTGATGCCAGTTGAAGATACTGCTAGTGATCACATGCAGCAAAATTTGCAAACTGAAGATCCAATTCAGAGTGATATGCAGGAATTCAGTGAGGCATACAATCATCAACTTCAAGTGGGTGATATAAGTAGTGGTGAAAATGATTCATCCAGCCACATCAACCCCACGGAGGAAAATAGTGTTGATATGAATCTGAACGAATCTGCTGCTCTGGTAGGTGAACATCTGGAAGAAGGTATTGAAAATGAACGAAGTGGCTGGAATCAGAGTAACCATGAATGGAGAGATAGCACTGACGAAGGTGTAGATGATAATCAATTCAGTACATCAATGCAGTGGCCTGAAAATGGATATGGAAATGAGGATGGAGAAAACTCTCGACTGCAAGAAGGTCCTGAAGTCTGGCAAGAGGATGGTGGCTTCCAAGAGGCTGTAGAAAATTGGTTGGGGGCTCCTTCTGATCTTGAAAGTGCTCCAGTTGGCAGGGTTCATGGATTTTATTTTCCAGATGATGACAATGTATACAGTGTTGAACTCAGGGAACTGCTTAATAGGAGAAGTGTCTCCAACCTCCTTCGTAGCAGTTTCAGAGATAGTCTTGACCAGTTGATACAATCGTATGTTGTAAGACAAGGCCATAATCAGATGGAGTGGGAGCTACAAGAAACAACCCCTTCTACTGCCTCTGTTGAACATGACCTTGAACAGCAGAGTAGGGATCAGATTGTTGGTCAGGAGGGTACTGTTAATAGTCCAATTGACCTACCTTCTTTACCTATCCCTCCTCCTTTGCCTCATTGGGACCGGCACCCTCGCCGTGACAGCTGGTCACAGTCACAGAGTGACATGAATAATCAGCATCTAGGAGGAATTGATTGGGAGGTTGTCAATGACTTGAGAATTGACATGGCTAGATTACAGCAAAGGATGAACAATATGCAAAGAATGCTGGAGGCTTGTATGGATATGCAGCTGGAGTTGCAGCGTTCAATAAGACAAGAAGTTTCTGCTGCCCTAAATCGTTCAGCTGGTTCATCAGGAATAAATGAGTTGGTGTCATCAGATGAATCTAAATGGGAATGTGTGAGGAAAGGGCTTTGCTGTATATGCTGTGAGAGCAATATTGATTCTTTGTTGTACAGATGTGGGCACTTGTGTACATGTTCTAAATGTGCCAATGAGTTGCTTCAAAGTAAAAGGAAGTGCCCTATGTGTCAAGCCCCCGTGGTGGAGGTTATACGTGCTTATTCTATACTATAG 1569 0.4302 MSFNSDIEFNAIEQTAASSSYVVPTVDSERSDSNTRRNNGLEMMGCQNCLQETTSENPDQHDPTGHVEGPQLQSLQFEPVNHLSSSVAVDRRDSTGQIADVNLVMPVEDTASDHMQQNLQTEDPIQSDMQEFSEAYNHQLQVGDISSGENDSSSHINPTEENSVDMNLNESAALVGEHLEEGIENERSGWNQSNHEWRDSTDEGVDDNQFSTSMQWPENGYGNEDGENSRLQEGPEVWQEDGGFQEAVENWLGAPSDLESAPVGRVHGFYFPDDDNVYSVELRELLNRRSVSNLLRSSFRDSLDQLIQSYVVRQGHNQMEWELQETTPSTASVEHDLEQQSRDQIVGQEGTVNSPIDLPSLPIPPPLPHWDRHPRRDSWSQSQSDMNNQHLGGIDWEVVNDLRIDMARLQQRMNNMQRMLEACMDMQLELQRSIRQEVSAALNRSAGSSGINELVSSDESKWECVRKGLCCICCESNIDSLLYRCGHLCTCSKCANELLQSKRKCPMCQAPVVEVIRAYSIL 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241735g00002 522 SUPERFAMILY RING/U-box 469 515 - -
Stsc241735g00002 522 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 449 520 IPR013083 -
Stsc241735g00002 522 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 110 522 - -
Stsc241735g00002 522 MobiDBLite consensus disorder prediction 353 385 - -
Stsc241735g00002 522 MobiDBLite consensus disorder prediction 185 230 - -
Stsc241735g00002 522 CDD mRING-HC-C3HC5_NEU1 470 519 - -
Stsc241735g00002 522 MobiDBLite consensus disorder prediction 144 165 - -
Stsc241735g00002 522 MobiDBLite consensus disorder prediction 185 205 - -
Stsc241735g00002 522 Coils Coil 399 426 - -
Stsc241735g00002 522 Pfam Zinc finger, C3HC4 type (RING finger) 467 514 - -
Stsc241735g00002 522 ProSiteProfiles Zinc finger RING-type profile. 470 509 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241735g00002 Stsc-Chr241735 16413 18620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241735g00002 470 516 C3H Transcription Factor Family AT3G06140 42.553 6.76e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241735g00002 - - gmx:100801329 635.18