Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241734g00013 ATGGAATCCGATGACGATATGCACGATGCCAACGATGTGGAGTCACTCGACGACGATTTCTACAGTGGCGAGACCGAAGAAGCTCCCATGGATTACTACAATGACTACGATGACGACGCCGATGACTACTTCGACGACGCTGATGATTCTGATAGGATTGAGTCTCGTCGCCCTGAGCAAAATTTTACCATATTGAAGGAATCCGATATTCAACAAAGGCAGGAAGATGATATCACTAGAGTGGCAACGGTTCTTTCAATATCGCGAGTTGCTGCCAGTATCCTGCTTCGACATTACAATTGGAGTGTTAGTAAGGTGCATGATGCATGGTTTGCTGATGAAGATCGAGTCCGTAAAACAGTTGGTTTGTTGGAGAGGCCAGTTGTCCAGCATTCTAATCCTAGAGAGATAACTTGTGGCATCTGTTTTGAAACGTATCCTCGAACTAAGATTCAAACTGCTACTTGCGGCCATCCCTATTGTTTTACTTGCTGGGCAGGATATATTAGCACATCAATTAACGATGGTCCTGGATGTTTGATGCTGAGATGTCCCGATCCCTCTTGTGGTGCTGCTGTTGATCAAGACATGATTAATCTCTTAGCACCTGATGAAGATAAAGAAAAATATGGCCGTTACCTTCTTAGGTCATACATTGAAGACAATAAAAAGACCAAGTGGTGTCCTGCTCCAGGCTGTGAATATGCTGTCAATTTTGATGCTGGCAGTGGAAATTATGATGTATCTTGCCTTTGTTCATATAGTTTTTGCTGGAATTGCACCGAGGAGGCTCACCGTCCAGTTGATTGTGGCACTGTGTCAAAGTGGATTCTGAAAAATAGTGCGGAATCTGAAAACATGAACTGGATACTTGCTAACTCAAAGCCATGTCCAAAGTGCAAGCGACCAATTGAAAAAAACCAAGGGTGCATGCACATGACATGTACTCCACCTTGTAAATTTGAATTTTGCTGGCTATGCCTTGGTGCATGGTCAGATCATGGTGAAAGGACTGGTGGTTTTTATGCTTGCAATCGATACGAGGCAGCGAAACAAGAAGGAGTGTATGATGAAACTGAAAGAAGAAGAGAAATGGCAAAGAACTCGTTGGAGAGGTACACACATTATTATGAGCGATGGGCCAGCAATCAATCTTCGAGGCAAAAAGCTCTTGCAGATCTACACCAGATGCAAACTGTTCATATTGAAAAGCTTAGTGACACACAATGCCAGCCTGAGTCACAGCTCAAGTTCATAACTGAGGCCTGGCTACAGATAGTTGAATGCCGACGCGTGCTTAAGTGGACGTATGCATATGGATATTACTTGCCTGAGCATGAACATGCTAAAAAACAGTTCTTTGAGTACTTGCAAGGTGAGGCAGAATCAGGTTTGGAGAGGCTTCATCAATGTGCTGAAAAGGAACTACAGTTGTTCCTTAATTCTGATGGCCCATCTAAAGAGTTATGA 1470 0.4347 MESDDDMHDANDVESLDDDFYSGETEEAPMDYYNDYDDDADDYFDDADDSDRIESRRPEQNFTILKESDIQQRQEDDITRVATVLSISRVAASILLRHYNWSVSKVHDAWFADEDRVRKTVGLLERPVVQHSNPREITCGICFETYPRTKIQTATCGHPYCFTCWAGYISTSINDGPGCLMLRCPDPSCGAAVDQDMINLLAPDEDKEKYGRYLLRSYIEDNKKTKWCPAPGCEYAVNFDAGSGNYDVSCLCSYSFCWNCTEEAHRPVDCGTVSKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEAAKQEGVYDETERRREMAKNSLERYTHYYERWASNQSSRQKALADLHQMQTVHIEKLSDTQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPEHEHAKKQFFEYLQGEAESGLERLHQCAEKELQLFLNSDGPSKEL 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241734g00013 489 ProSiteProfiles TRIAD supradomain profile. 135 348 IPR044066 -
Stsc241734g00013 489 SUPERFAMILY RING/U-box 289 337 - -
Stsc241734g00013 489 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 69 436 IPR031127 GO:0004842|GO:0016567
Stsc241734g00013 489 SMART ibrneu5 283 344 IPR002867 GO:0008270
Stsc241734g00013 489 SMART ibrneu5 208 270 IPR002867 GO:0008270
Stsc241734g00013 489 Pfam IBR domain, a half RING-finger domain 287 335 IPR002867 GO:0008270
Stsc241734g00013 489 Pfam IBR domain, a half RING-finger domain 208 270 IPR002867 GO:0008270
Stsc241734g00013 489 SUPERFAMILY RING/U-box 134 220 - -
Stsc241734g00013 489 CDD BRcat_RBR_ANKIB1 215 279 - -
Stsc241734g00013 489 SUPERFAMILY RING/U-box 208 277 - -
Stsc241734g00013 489 MobiDBLite consensus disorder prediction 1 51 - -
Stsc241734g00013 489 Gene3D - 266 487 - -
Stsc241734g00013 489 CDD Rcat_RBR_ARI7-like 293 347 - -
Stsc241734g00013 489 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 221 IPR013083 -
Stsc241734g00013 489 Pfam Ariadne domain 357 479 IPR045840 -
Stsc241734g00013 489 ProSiteProfiles Zinc finger RING-type profile. 139 183 IPR001841 -
Stsc241734g00013 489 FunFam RBR-type E3 ubiquitin transferase 271 489 - -
Stsc241734g00013 489 CDD RING-HC_ARI6-like 136 197 - -
Stsc241734g00013 489 MobiDBLite consensus disorder prediction 1 48 - -
Stsc241734g00013 489 FunFam RBR-type E3 ubiquitin transferase 133 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241734g00013 Stsc-Chr241734 75625 80582 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241734g00013 17 489 ARIADNE family AT1G65430 74.423 0.0 750
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241734g00013 K11968 - gmx:100810427 961.444