Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241732g00016 ATGACCTCCGTTTCACGTAACCGTCCAAAGGACGGAATTACTCTTCTGTCCTTCTTCTTTCTCTTTCAACTCCTTCTCTTCCTTCCCTTCACCGGAGCACAATCCGATAACAAAAGCAACAACGACGAAAACAACGCTTACTACAATCGTTTCAGCCCTTCCATGGCGATCATAGTTGTAATCCTCATCTCCGCGCTCTTCCTCATGGGATTCTTCTCCATCTACATCCGCCACTGCTCCGACTCTCCTTCCGCCAGTGTCCGCCACATCGCCGCCGGCATATCCCGCCGCGGACACCGAGGTCTCGACCGCGCCGTCATCGACTCGTTCCCAACGCTAGATTACTCCGTCGTGAAAGTCCACAAGATCGGAAAGGGAGCTCTGGAATGCGCAGTGTGCCTCAACGAGTTTGAAGACACCGAAACGCTGCGTTTGATTCCCAAATGCGACCACGTGTTCCACCCTGAGTGCATCGACGAGTGGCTCGAGTCTCACACCACGTGTCCGGTTTGCAGAGCCAACCTTGTCCCACAGCCGGGAGACTCCGTACGCGGCACTCCCGCCGCCGTCGTGGTTCCGGAGGCCACAAACGACGATTTGTCGTCGCCGCGGGATTTGGGATCGTGGGACCAAAACGACGTCGTGATTGCCGTCGAGCAAGAAAGTGAGAATCAAAATTCGGAGACTAACAAGAATGAAAGGGAAAGTGTTGATGAACCGGAAGTGCTGTGTTTGAATGTGAACCAGGCGCTGAACCGGAACCGAACCAGGGGCTCCCGGTCAGGGCGGCCAAGGAGGTTTCCGAGATCGCATTCGACCGGGCACTCTCTAGTTCAACCGGGTGAGGACACAGAACGGTTCACTCTAAGATTGCCTTTGGAGGTGAGGAAGAAGATACTTGAACCTCAGTTGAACCGAGCGAGGAGCTTGGTTATTTTTCCAACAGAAGGGAGCTCAAGGAGGGGTTACCGAACCGGGGTTGGAGAAGGAAGTAGTAGGGGCCGGTCTACAAGGCGGTTGGACCGGGGTTTTAAGTCAGACCGATGGGTTTTTACTATGGCGCCTCCGTTTCTGGTTAGAGCGTCGTCCATTAGGTCACCAAGGGTGGCTAATAGTACTGCCGGCGGAAGTTCATCGGCAGCTCCTGCAGCTGCTCCACAAGCTCCGACAGCGGCAGCAACAACAGAAATAGACCATTTACCGGTTTAA 1209 0.5443 MTSVSRNRPKDGITLLSFFFLFQLLLFLPFTGAQSDNKSNNDENNAYYNRFSPSMAIIVVILISALFLMGFFSIYIRHCSDSPSASVRHIAAGISRRGHRGLDRAVIDSFPTLDYSVVKVHKIGKGALECAVCLNEFEDTETLRLIPKCDHVFHPECIDEWLESHTTCPVCRANLVPQPGDSVRGTPAAVVVPEATNDDLSSPRDLGSWDQNDVVIAVEQESENQNSETNKNERESVDEPEVLCLNVNQALNRNRTRGSRSGRPRRFPRSHSTGHSLVQPGEDTERFTLRLPLEVRKKILEPQLNRARSLVIFPTEGSSRRGYRTGVGEGSSRGRSTRRLDRGFKSDRWVFTMAPPFLVRASSIRSPRVANSTAGGSSSAAPAAAPQAPTAAATTEIDHLPV 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241732g00016 402 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 36 248 - -
Stsc241732g00016 402 MobiDBLite consensus disorder prediction 368 402 - -
Stsc241732g00016 402 CDD RING-H2_EL5-like 129 172 - -
Stsc241732g00016 402 SMART ring_2 130 171 IPR001841 -
Stsc241732g00016 402 MobiDBLite consensus disorder prediction 251 283 - -
Stsc241732g00016 402 MobiDBLite consensus disorder prediction 368 384 - -
Stsc241732g00016 402 SUPERFAMILY RING/U-box 125 179 - -
Stsc241732g00016 402 MobiDBLite consensus disorder prediction 319 339 - -
Stsc241732g00016 402 MobiDBLite consensus disorder prediction 220 239 - -
Stsc241732g00016 402 FunFam E3 ubiquitin-protein ligase ATL6 91 178 - -
Stsc241732g00016 402 Pfam Ring finger domain 129 172 IPR001841 -
Stsc241732g00016 402 ProSiteProfiles Zinc finger RING-type profile. 130 172 IPR001841 -
Stsc241732g00016 402 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 177 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241732g00016 Stsc-Chr241732 125597 127344 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241732g00016 15 381 Rapid Response to Elicitors AT3G05200 44.186 3.47e-86 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241732g00016 K10664 - gmx:100810865 446.432