Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241732g00004 ATGGCGCTAAAAGCAGTGGTGTATCCCCAAACACAAGACCCATCATTTCTCTATGGACTCAATTACAACGACTTCCATCATAATGAACAAGACCCAACACTAGCACTACAAACTTATTATGCTTCAGAAATTTGTAACAACAACAACAACAACAACACTTGTTCATCACCACCAGAATTATTATTGGCCACTGATCTCAGCAACACTAGTGCTGCTACTCGTCCCAAGAGAAGGAGAGCGAAGAGCAGGAAGAACAAAGAACAGATTGAGAACCAGAGAATGACTCACATTGCTGTGGAACGCAACAGAAGGAAGCAGATGAATCATTATCTCTCTGTTCTTCGCTCTTTAATGCCTGATTCTTATGTCCAAAGGGGTGATCAAGCTTCAATAATAGGAGGAGCTATTAACTTCGTTAAGGAGCTTGAACAGAAGCTTCAGTTCCTTGGAGCTACTCATCATCATCAACATGGTAATGAACACAACAACAACAACACACCCTTTTCTGAGTTCTTCACATTCCCACAGTACACAACAACAACAACATCAAGCAATAATGGAGGAGGAGAAGGAGGGTGTGACAAATCACCATCATCATCACCATCATCAACAACAACAACAACAACAGTGGTGGGATCAGGTGGTGCTGACATAGAAGTGACAATGGTGGAGAGCCATGCAAATGTGAAGATAAGATCAAAGAAGAAGCCAAAGCAGCTCTTGAAGATGGTATCTGCTTTGCAAACAATGAGCCTTACAATCTTGCACCTTAATGTCACCACCACCATCAATCAATTTGTTCTCTACTCTCTCAGTCTTAAGGTAGAAGATGATTGCAAGTTGGGATCAGTGGATGATATTGCTGCAGCTGTATACCAGCTTATGAATAGCATTCAACAACAAGCACCAACAATCTTCAACTAA 924 0.4145 MALKAVVYPQTQDPSFLYGLNYNDFHHNEQDPTLALQTYYASEICNNNNNNNTCSSPPELLLATDLSNTSAATRPKRRRAKSRKNKEQIENQRMTHIAVERNRRKQMNHYLSVLRSLMPDSYVQRGDQASIIGGAINFVKELEQKLQFLGATHHHQHGNEHNNNNTPFSEFFTFPQYTTTTTSSNNGGGEGGCDKSPSSSPSSTTTTTTVVGSGGADIEVTMVESHANVKIRSKKKPKQLLKMVSALQTMSLTILHLNVTTTINQFVLYSLSLKVEDDCKLGSVDDIAAAVYQLMNSIQQQAPTIFN 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241732g00004 307 MobiDBLite consensus disorder prediction 179 212 - -
Stsc241732g00004 307 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 91 156 IPR036638 GO:0046983
Stsc241732g00004 307 PANTHER MAX DIMERIZATION, MAD 31 301 - -
Stsc241732g00004 307 Gene3D - 84 156 IPR036638 GO:0046983
Stsc241732g00004 307 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 91 142 IPR011598 GO:0046983
Stsc241732g00004 307 SMART finulus 97 148 IPR011598 GO:0046983
Stsc241732g00004 307 MobiDBLite consensus disorder prediction 68 88 - -
Stsc241732g00004 307 Pfam Helix-loop-helix DNA-binding domain 92 143 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241732g00004 Stsc-Chr241732 40462 42732 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241732g00004 23 275 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 45.627 4.51e-64 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc241732g00004 HLH 5.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241732g00004 - - adu:107465443 377.481